Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical pr...    32   0.34 
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to i...    27   7.2  

>Z22181-7|CAA80189.2|   62|Caenorhabditis elegans Hypothetical
           protein ZK632.9 protein.
          Length = 62

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 151 GGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNAEQTRR 264
           G  +RTK +  EH +   P G +RK+V    N E  R+
Sbjct: 23  GSGKRTKSDRVEHKHASQPGGDTRKVVQTASNGEAKRK 60


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical
           protein F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 342 FGNSIVLLLDHSCLLISNPSSVWCLKSSCLLG 247
           F    +L L+ S   IS   ++WC+K  C+LG
Sbjct: 133 FRRKELLFLEFSDYNISYDRAIWCVKLLCILG 164


>U88308-3|AAB42329.2|  430|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 19 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 103 YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNAE 252
           Y+ Y+F+   H+ TG   ++  K E  E      P G+  ++   L   E
Sbjct: 265 YNNYDFEILSHLATGTKPERERKSEKEESAKTSQPRGNEEELKNLLFGRE 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,413,983
Number of Sequences: 27780
Number of extensions: 203691
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)