Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.71 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   3.8  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   6.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   6.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 234 RDDLSRMPXRIEVVGVFRRFF--LGALLT 154
           +D+L + P RI   G+FRRF+  LG L T
Sbjct: 538 KDELGK-PSRISKQGLFRRFYNLLGKLST 565


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 300 IDNYGLAEGLLSCQTKGGRYCGY 368
           I+N     GL SC T  GR  GY
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGY 157


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 300 IDNYGLAEGLLSCQTKGGRYCGY 368
           I+N     GL SC T  GR  GY
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGY 157


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 300 IDNYGLAEGLLSCQTKGGRYCGY 368
           I+N     GL SC T  GR  GY
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGY 157


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 85  EAFFDEYDYYNFD 123
           E + D+YDY N D
Sbjct: 21  ELYSDKYDYVNID 33


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 85  EAFFDEYDYYNFD 123
           E + D+YDY N D
Sbjct: 21  ELYSDKYDYVNID 33


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 5/16 (31%), Positives = 12/16 (75%)
 Frame = -3

Query: 389 IHPNTPRVXAIASSFR 342
           IHP  PR+ ++ ++++
Sbjct: 160 IHPGDPRIKSVVTAYK 175


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 218  ECPXGSKWLVCSDASFLVRCLPP 150
            E P   K LV S  S LV   PP
Sbjct: 1181 EAPIAIKALVMSSESILVSWRPP 1203


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +1

Query: 151 GGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNAEQTRRLQ 270
           GG++ T +++ +  +H D   +  +I+    + E+ R  Q
Sbjct: 151 GGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQ 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,026
Number of Sequences: 438
Number of extensions: 2600
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)