Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0703.Seq
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21540.1 68416.m02717 transducin family protein / WD-40 repea...    28   5.1  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    28   5.1  
At3g23190.1 68416.m02924 lesion inducing protein-related similar...    27   9.0  

>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
           family protein contains Pfam profile: PF00400 WD domain,
           G-beta repeat (10 copies); similar to WD-repeat protein
           3 (SP:Q9UNX4) [Homo sapiens]
          Length = 955

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -2

Query: 378 HSSGXRNSVLLSFGNSIVLLLDHSCLLISNPSSVWCLKS 262
           H S  R SV LS  N++++   HS + I NPS+  CL++
Sbjct: 405 HRSDVR-SVTLSEDNTLLMSTSHSEVKIWNPSTGSCLRT 442


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 121 DHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNAEQTRRLQ 270
           DH+K      G ++R K + S+H +H     HS+KI T     E+ RRL+
Sbjct: 96  DHEKGASKQVGRRERAKPDPSKH-HHRSHLPHSKKIET-----EEERRLR 139


>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 103 YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPXGHSRKIVTKLMNAEQTRR 264
           YD+YN D+D+  FT    K    KE  E T   D  G +  + T ++N E  ++
Sbjct: 103 YDFYNRDYDRDHFTVFYTK---FKEFVEETTSAD-GGVAMSLYTSVVNEESRQK 152


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,505
Number of Sequences: 28952
Number of extensions: 184662
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)