Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0700.Seq
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    28   0.76 
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    27   1.8  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   5.4  

>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = +3

Query: 219 QTEPSEDVGNGESAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVE 389
           +TE ++ +   +S ++ELK  R SSL ++K +  + YKV     A  + +YL+   E
Sbjct: 289 ETEITDCMEKLQSNLSELKSSRKSSLISLKSFWLSFYKVSLRYDA--LYEYLRQIAE 343


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 225 EPSEDVGNGESAIAELKERRXSSLQAIKKYIAAQYKVDAEKLA 353
           E +    +G + +A+  +++   L+A+  YIA QY  +  KLA
Sbjct: 264 EKASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLA 306


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -2

Query: 388 STAFFRYFLMNGANFSASTLY---WAAMYFLIAC 296
           S    R+ L   + FS   LY   WA+MYFL  C
Sbjct: 715 SCFIMRHHLFVWSVFSPKLLYNASWASMYFLAKC 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,957
Number of Sequences: 5004
Number of extensions: 25989
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)