Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0700.Seq
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0608 + 4515709-4515951,4516085-4516678                           31   0.58 
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    27   7.2  
03_06_0316 + 33091194-33091370,33091451-33092155                       27   9.5  
02_05_0265 + 27267361-27268494                                         27   9.5  

>07_01_0608 + 4515709-4515951,4516085-4516678
          Length = 278

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 25/62 (40%), Positives = 29/62 (46%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSF 437
           AI  LKER  SS QAI K+I A +      L P  RK L   ++  T      K    SF
Sbjct: 86  AIVALKERTGSSSQAIGKHIHANH---GANLPPNFRKLLSGNLKKLTAAGKLAK-VKNSF 141

Query: 438 KL 443
           KL
Sbjct: 142 KL 143


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 413
           +AI  L E+  S+  AI K+I  +Y       A  +  +L    ESG LI  K
Sbjct: 22  AAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFLK 74


>03_06_0316 + 33091194-33091370,33091451-33092155
          Length = 293

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYL----KNAVESGTLIQTK 413
           AIA LKER  SS  AI K++  ++K   + L    RK L    K  V +G L + K
Sbjct: 64  AIATLKERTGSSQYAIGKFLEDKHK---DHLPSNFRKQLLVQIKKLVAAGKLTKVK 116


>02_05_0265 + 27267361-27268494
          Length = 377

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 430 PEAPLPLVCIRVPDSTAFFRY 368
           P   LPL+C ++PDS  F R+
Sbjct: 28  PPELLPLICKKLPDSADFVRF 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,722,503
Number of Sequences: 37544
Number of extensions: 170043
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)