Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0700.Seq
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36) 68 6e-12
SB_48636| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 7e-12
SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 2e-11
SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38) 65 4e-11
SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 4e-11
SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39) 64 7e-11
SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 9e-11
SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 59 2e-09
SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37) 59 2e-09
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37) 59 2e-09
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-09
SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38) 58 6e-09
SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37) 58 6e-09
SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27) 57 1e-08
SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 6e-08
SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30) 51 7e-07
SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15) 43 1e-04
SB_35969| Best HMM Match : B56 (HMM E-Value=3.1) 33 0.19
SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
Length = 650
Score = 67.7 bits (158), Expect = 6e-12
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI+ LK+R SS QAI+KYI A YKV E + ++ LK AV G+++QTKG GASGS
Sbjct: 491 AAISSLKDRNGSSRQAIEKYIKANYKV-GESVGVHLKMALKRAVAGGSILQTKGVGASGS 549
Query: 435 FKL 443
FKL
Sbjct: 550 FKL 552
>SB_48636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 67.3 bits (157), Expect = 7e-12
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV +K++ ++ LK E GTL+ TKG GASGS
Sbjct: 24 TAIGALKERGGSSRQAIEKYIKANYKV-GDKVSTQLKMALKRMSEKGTLVHTKGTGASGS 82
Query: 435 FKL 443
FKL
Sbjct: 83 FKL 85
>SB_41055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 65.7 bits (153), Expect = 2e-11
Identities = 35/63 (55%), Positives = 43/63 (68%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV + + +++ LK E GTL+ TKG GASGS
Sbjct: 61 AAIDALKERSGSSRQAIEKYIKANYKV-GDNVDTYLKLALKRMSEKGTLVHTKGTGASGS 119
Query: 435 FKL 443
FKL
Sbjct: 120 FKL 122
>SB_12695| Best HMM Match : Linker_histone (HMM E-Value=1.6e-38)
Length = 184
Score = 64.9 bits (151), Expect = 4e-11
Identities = 35/63 (55%), Positives = 42/63 (66%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV +K+ ++ LK E G L+ TKG GASGS
Sbjct: 26 AAIGALKERGGSSRQAIEKYIKANYKV-GDKVGAQLKMALKRMSEKGALVHTKGTGASGS 84
Query: 435 FKL 443
FKL
Sbjct: 85 FKL 87
>SB_44588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 64.9 bits (151), Expect = 4e-11
Identities = 35/63 (55%), Positives = 42/63 (66%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV +K+ ++ LK E G L+ TKG GASGS
Sbjct: 26 AAIGALKERGGSSRQAIEKYIKANYKV-GDKVGTQLKMALKRMSEKGALVHTKGTGASGS 84
Query: 435 FKL 443
FKL
Sbjct: 85 FKL 87
>SB_41056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 64.1 bits (149), Expect = 7e-11
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV + + +++ LK + GTL+ TKG GASGS
Sbjct: 61 AAIDALKERSGSSRQAIEKYIKANYKV-GDNVDTYLKLALKRMSKKGTLVHTKGTGASGS 119
Query: 435 FKL 443
FKL
Sbjct: 120 FKL 122
>SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39)
Length = 370
Score = 64.1 bits (149), Expect = 7e-11
Identities = 34/63 (53%), Positives = 43/63 (68%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV + + +++ LK + GTL+ TKG GASGS
Sbjct: 221 AAIDALKERSGSSRQAIEKYIKANYKV-GDNVDTYLKLALKRMSKKGTLVHTKGTGASGS 279
Query: 435 FKL 443
FKL
Sbjct: 280 FKL 282
>SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 63.7 bits (148), Expect = 9e-11
Identities = 34/63 (53%), Positives = 42/63 (66%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV + + +++ LK E GTL+ TKG GA GS
Sbjct: 147 AAIDALKERSGSSRQAIEKYIKANYKV-GDNVDTYLKLALKRMSEKGTLVHTKGTGACGS 205
Query: 435 FKL 443
FKL
Sbjct: 206 FKL 208
>SB_31725| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 184
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI YKV + + ++ LK + G L+ TKG GASGS
Sbjct: 28 AAIGALKERNGSSRQAIEKYIKGNYKV-GDGVGVHLKLALKRMSDKGKLVHTKGVGASGS 86
Query: 435 FKL 443
FKL
Sbjct: 87 FKL 89
>SB_25699| Best HMM Match : Linker_histone (HMM E-Value=1.5e-37)
Length = 179
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI YKV + + ++ LK + G L+ TKG GASGS
Sbjct: 28 AAIGALKERNGSSRQAIEKYIKGNYKV-GDGVGVHLKLALKRMSDKGKLVHTKGVGASGS 86
Query: 435 FKL 443
FKL
Sbjct: 87 FKL 89
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/64 (53%), Positives = 41/64 (64%)
Frame = +3
Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASG 431
++AI LKER SS QAI KYI A YKV + ++ LK +G+LI TKG GASG
Sbjct: 25 KTAIGALKERNGSSRQAIVKYIKANYKVQ-DNADVHVKLALKRMSLAGSLIHTKGVGASG 83
Query: 432 SFKL 443
SFKL
Sbjct: 84 SFKL 87
>SB_30056| Best HMM Match : Linker_histone (HMM E-Value=2.4e-37)
Length = 184
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/63 (50%), Positives = 40/63 (63%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI YKV + + ++ LK + G L+ TKG GASGS
Sbjct: 28 AAIGALKERNGSSRQAIEKYIKGNYKV-GDGVGVHLKLALKRMSDKGKLVHTKGVGASGS 86
Query: 435 FKL 443
FKL
Sbjct: 87 FKL 89
>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 58.4 bits (135), Expect = 3e-09
Identities = 33/63 (52%), Positives = 40/63 (63%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI K+I A Y + A ++ LK V +G L+Q KGKGASGS
Sbjct: 54 TAITSLKERGGSSRQAIAKFIKANYPAVGDPGA-HLKMALKRGVAAGRLVQPKGKGASGS 112
Query: 435 FKL 443
FKL
Sbjct: 113 FKL 115
>SB_17373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 58.4 bits (135), Expect = 3e-09
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI A YKV + ++ LK G L+ TKG GASGS
Sbjct: 90 AAIGALKERGGSSRQAIEKYIKANYKVG--DVGTHLKLALKRMSAKGALVHTKGTGASGS 147
Query: 435 FKL 443
FKL
Sbjct: 148 FKL 150
>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
Length = 234
Score = 57.6 bits (133), Expect = 6e-09
Identities = 32/63 (50%), Positives = 39/63 (61%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI YKV + + ++ LK + G L TKG GASGS
Sbjct: 75 AAIGALKERNGSSRQAIEKYIKGNYKV-GDNVGVQLKLALKRMSDKGKLAHTKGVGASGS 133
Query: 435 FKL 443
FKL
Sbjct: 134 FKL 136
>SB_25704| Best HMM Match : Linker_histone (HMM E-Value=8.3e-37)
Length = 184
Score = 57.6 bits (133), Expect = 6e-09
Identities = 31/63 (49%), Positives = 40/63 (63%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
+AI LKER SS QAI+KYI +KV + + ++ LK + G L+ TKG GASGS
Sbjct: 28 AAIGALKERNGSSRQAIEKYIKGNFKV-GDGVGVHLKLALKRMSDKGKLVHTKGVGASGS 86
Query: 435 FKL 443
FKL
Sbjct: 87 FKL 89
>SB_45217| Best HMM Match : Linker_histone (HMM E-Value=4.4e-27)
Length = 228
Score = 56.8 bits (131), Expect = 1e-08
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Frame = +3
Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGA 425
E AI L ER SS Q I KY+ A + V ++EKL ++ LK V+SG L++T G+GA
Sbjct: 22 EEAIKRLHERGGSSRQKIVKYVQANFDVGDNSEKL---VKASLKKGVDSGRLVRTSGQGA 78
Query: 426 SGSFKL 443
SGSFKL
Sbjct: 79 SGSFKL 84
>SB_41054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 54.4 bits (125), Expect = 6e-08
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Frame = +3
Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQ-TKGKGASG 431
+AI LKER SS QAI+KYI A YKV + + +++ LK GTL + KG GASG
Sbjct: 23 AAIDALKERSGSSRQAIEKYIKANYKV-GDNVDTYLKLALKRMSGKGTLSKLEKGTGASG 81
Query: 432 SFKL 443
SFKL
Sbjct: 82 SFKL 85
>SB_18627| Best HMM Match : Histone (HMM E-Value=1.7e-30)
Length = 279
Score = 50.8 bits (116), Expect = 7e-07
Identities = 28/58 (48%), Positives = 35/58 (60%)
Frame = +3
Query: 273 KERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGSFKLE 446
KER SS QAI+KYI YKV + + + LK + G L+ TK GASGSFKL+
Sbjct: 129 KERNGSSRQAIEKYIKGNYKV-GDGVGVHLNLALKRMSDKGKLVHTKVVGASGSFKLD 185
>SB_58714| Best HMM Match : Linker_histone (HMM E-Value=5.7e-15)
Length = 169
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +3
Query: 282 RXSSLQAIKKYIAAQYKVDAEKLA-PFIRKYLKNA-VESGTLIQTKGKGASGSFKLE 446
+ +S QAI KYI ++ + K + + LK A GTL+ KGKGA+GSFKL+
Sbjct: 27 KGASRQAINKYIVKEFNLTENKHHHTMLNQALKRASAPEGTLVHNKGKGAAGSFKLK 83
>SB_35969| Best HMM Match : B56 (HMM E-Value=3.1)
Length = 174
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 372 LKNA-VESGTLIQTKGKGASGSFKL 443
LK A GTL+ KGKGA+GSFKL
Sbjct: 2 LKRASAPEGTLVHNKGKGAAGSFKL 26
>SB_37873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 258 AIAELKERRXS-SLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTKGKGASGS 434
A+ EL+E S S Q I + + + + + + + + AVE G +I+T G G +GS
Sbjct: 15 AVRELQEYHSSVSRQKIVENVQSACR-RGKNVIRLAKLAIIKAVEVGLIIRTSGSGLNGS 73
Query: 435 F 437
F
Sbjct: 74 F 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,140
Number of Sequences: 59808
Number of extensions: 206309
Number of successful extensions: 396
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -