Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0700.Seq
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 l...    54   5e-08
AF017812-1|AAB70559.1|  191|Caenorhabditis elegans histone H1.2 ...    52   2e-07
AF017811-1|AAB70666.1|  191|Caenorhabditis elegans histone H1.2 ...    52   2e-07
AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 li...    52   2e-07
AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 li...    50   1e-06
AF026521-1|AAB82588.1|  253|Caenorhabditis elegans histone H1.4 ...    50   1e-06
AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4 ...    50   1e-06
Z79603-3|CAB01892.1|  208|Caenorhabditis elegans Hypothetical pr...    49   2e-06
Z78239-1|CAB01632.1|  232|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AF017810-1|AAB70665.1|  208|Caenorhabditis elegans histone H1.1 ...    49   2e-06
AF002679-1|AAB60893.1|  232|Caenorhabditis elegans histone H1-li...    49   2e-06
AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5 ...    49   2e-06
AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 li...    49   2e-06
X53277-1|CAA37372.1|  208|Caenorhabditis elegans histone H1 prot...    48   3e-06
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    46   2e-05
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    46   2e-05
AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    36   0.024

>AF016425-12|AAB65336.1|  190|Caenorhabditis elegans Histone h1 like
           protein 6 protein.
          Length = 190

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGAS 428
           +AI+ LKER+ SS  AI KYI A YK+    +K+   +R  LK  V S  L+QT G GA+
Sbjct: 44  AAISSLKERKGSSKIAILKYITANYKLGDQVKKINSNLRSALKKGVASKALVQTVGTGAT 103

Query: 429 GSFKL 443
           G F++
Sbjct: 104 GRFRV 108


>AF017812-1|AAB70559.1|  191|Caenorhabditis elegans histone H1.2
           protein.
          Length = 191

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGKGAS 428
           +AI+ LKER+ SS  AI KYI A YKV  +  K+   +R  L   V S  L+Q+ G GAS
Sbjct: 47  AAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGNGAS 106

Query: 429 GSFKL 443
           G F++
Sbjct: 107 GRFRV 111


>AF017811-1|AAB70666.1|  191|Caenorhabditis elegans histone H1.2
           protein.
          Length = 191

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGKGAS 428
           +AI+ LKER+ SS  AI KYI A YKV  +  K+   +R  L   V S  L+Q+ G GAS
Sbjct: 47  AAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGNGAS 106

Query: 429 GSFKL 443
           G F++
Sbjct: 107 GRFRV 111


>AC084197-2|AAM44399.1|  241|Caenorhabditis elegans Histone h1 like
           protein 2, isoforma protein.
          Length = 241

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGKGAS 428
           +AI+ LKER+ SS  AI KYI A YKV  +  K+   +R  L   V S  L+Q+ G GAS
Sbjct: 97  AAISSLKERKGSSKIAILKYITANYKVGDQLTKINSRLRAALNKGVASKALVQSVGNGAS 156

Query: 429 GSFKL 443
           G F++
Sbjct: 157 GRFRV 161


>AF068708-3|AAC17754.1|  253|Caenorhabditis elegans Histone h1 like
           protein 4 protein.
          Length = 253

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGASG 431
           AI+ +K+R+  S  AI KYI  +Y +   A K+   +RK L   +ES   +Q  G GA+G
Sbjct: 62  AISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGNGANG 121

Query: 432 SFKL 443
            F+L
Sbjct: 122 RFRL 125


>AF026521-1|AAB82588.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGASG 431
           AI+ +K+R+  S  AI KYI  +Y +   A K+   +RK L   +ES   +Q  G GA+G
Sbjct: 62  AISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGNGANG 121

Query: 432 SFKL 443
            F+L
Sbjct: 122 RFRL 125


>AF005371-1|AAB81029.1|  253|Caenorhabditis elegans histone H1.4
           protein.
          Length = 253

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGASG 431
           AI+ +K+R+  S  AI KYI  +Y +   A K+   +RK L   +ES   +Q  G GA+G
Sbjct: 62  AISSIKDRKGPSRAAILKYITTKYTLGDQANKINAHLRKALNKGLESNAFVQASGNGANG 121

Query: 432 SFKL 443
            F+L
Sbjct: 122 RFRL 125


>Z79603-3|CAB01892.1|  208|Caenorhabditis elegans Hypothetical
           protein M163.3 protein.
          Length = 208

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGA 425
           + AI +LK+R+ +S QAI K+I+  YK+  +  ++   +R+ LK  V S  L+Q  G GA
Sbjct: 46  KEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGSGA 105

Query: 426 SGSFKL 443
           +G F++
Sbjct: 106 NGRFRV 111


>Z78239-1|CAB01632.1|  232|Caenorhabditis elegans Hypothetical
           protein C30G7.1 protein.
          Length = 232

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGA 425
           + AI  +     SS  AI KYIA  Y V  +  K+   +R  LK AV+SG + QT+G GA
Sbjct: 45  KGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRGHGA 104

Query: 426 SGSFKL 443
           +GSF++
Sbjct: 105 TGSFRM 110


>AF017810-1|AAB70665.1|  208|Caenorhabditis elegans histone H1.1
           protein.
          Length = 208

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGA 425
           + AI +LK+R+ +S QAI K+I+  YK+  +  ++   +R+ LK  V S  L+Q  G GA
Sbjct: 46  KEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHLRQALKRGVTSKALVQAAGSGA 105

Query: 426 SGSFKL 443
           +G F++
Sbjct: 106 NGRFRV 111


>AF002679-1|AAB60893.1|  232|Caenorhabditis elegans histone H1-like
           protein protein.
          Length = 232

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGA 425
           + AI  +     SS  AI KYIA  Y V  +  K+   +R  LK AV+SG + QT+G GA
Sbjct: 45  KGAIQAIDNGTGSSKAAILKYIAQNYHVGENLPKVNNHLRSVLKKAVDSGDIEQTRGHGA 104

Query: 426 SGSFKL 443
           +GSF++
Sbjct: 105 TGSFRM 110


>AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5
           protein.
          Length = 225

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGASG 431
           A++ LK+R+ SS  AI K+I A+Y +     K    +R  LK  V S  L+QT G GA+G
Sbjct: 48  AVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGIGANG 107

Query: 432 SFKL 443
            F+L
Sbjct: 108 RFRL 111


>AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 like
           protein 5 protein.
          Length = 225

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = +3

Query: 258 AIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGASG 431
           A++ LK+R+ SS  AI K+I A+Y +     K    +R  LK  V S  L+QT G GA+G
Sbjct: 48  AVSNLKDRKGSSRVAIFKFITAKYTLGDQVNKTNAHLRSALKKGVVSKVLVQTNGIGANG 107

Query: 432 SFKL 443
            F+L
Sbjct: 108 RFRL 111


>X53277-1|CAA37372.1|  208|Caenorhabditis elegans histone H1
           protein.
          Length = 208

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKV--DAEKLAPFIRKYLKNAVESGTLIQTKGKGA 425
           + AI +LK+R+ +S QAI K+I+  YK+  +  ++    R+ LK  V S  L+Q +G GA
Sbjct: 46  KEAIKQLKDRKGASKQAILKFISQNYKLGDNVIQINAHHRQALKRGVTSKALVQARGSGA 105

Query: 426 SGSFKL 443
           +G F++
Sbjct: 106 NGRFRV 111


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGKGAS 428
           +AI  LKER+ SS  AI KYI   Y V  +  K+   +R  L   V S  L+Q+ G GAS
Sbjct: 47  AAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGTGAS 106

Query: 429 GSFKL 443
           G F++
Sbjct: 107 GRFRV 111


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAE--KLAPFIRKYLKNAVESGTLIQTKGKGAS 428
           +AI  LKER+ SS  AI KYI   Y V  +  K+   +R  L   V S  L+Q+ G GAS
Sbjct: 47  AAINGLKERKGSSKIAILKYITKNYNVGDQIIKINARLRDTLNKGVVSKALVQSVGTGAS 106

Query: 429 GSFKL 443
           G F++
Sbjct: 107 GRFRV 111


>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 35.5 bits (78), Expect = 0.024
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +3

Query: 216 SQTEPSEDVGNGESAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESG 395
           SQ    E V NG+ +     E   S+ Q  K+  +A Y+VD+  L  + + YLKNA+E G
Sbjct: 245 SQLVSIELVENGDGS-----ELLSSNGQNFKRSFSAVYRVDSSALRQWEKSYLKNAMEKG 299

Query: 396 TLIQTKGKGAS 428
            + Q   + AS
Sbjct: 300 DVEQNFKRTAS 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,654
Number of Sequences: 27780
Number of extensions: 148452
Number of successful extensions: 387
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)