Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0700.Seq
         (533 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06760.1 68414.m00718 histone H1, putative similar to histone...    33   0.16 
At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26...    31   0.48 
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    30   1.1  
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P...    28   3.4  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    28   4.5  
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    27   7.9  

>At1g06760.1 68414.m00718 histone H1, putative similar to histone
           H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana];
           identical to cDNA H1-1C mRNA for histone H1-1 (partial)
           GI:732560
          Length = 274

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 413
           + AI  LKER  SS  AI+K+I  + K         +   LK  V SG L++ K
Sbjct: 70  KDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVK 123


>At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26569
           Histone H1.2 {Arabidopsis thaliana}
          Length = 273

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 252 ESAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 413
           + AI  LKER  SS  AI+K+I  ++K         +   LK  V S  L++ K
Sbjct: 70  KDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVK 123


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 413
           +AIA L E   SS QAI +YI   Y          +  +LK    SG L+  K
Sbjct: 84  TAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVK 136


>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family;similar
           to HMG I/Y like protein (GI:15706274) [Glycine
           max];similar to HMR1 protein (GI:4218141) [Antirrhinum
           majus]; similar to high mobility group protein
           (GI:1483173) [Canavalia gladiata]
          Length = 480

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +3

Query: 255 SAIAELKERRXSSLQAIKKYIAAQYKVDAEKLAPFIRKYLKNAVESGTLIQTK 413
           +AIA L E   SS  AI +YI   Y       A  +  +LK    SG L   K
Sbjct: 74  AAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVK 126


>At4g20160.1 68417.m02949 expressed protein ; expression supported by
            MPSS
          Length = 1188

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 436  KDPEAPLPLVCIRVPDSTAFFRYFLMNGANFSASTL 329
            KDP      VC  +P  +  +RYF +   NF + TL
Sbjct: 1152 KDPLKRKCCVCSEMPVDSLLYRYFCLIYRNFKSETL 1187


>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 138 SSSGYTRQKTKNIREWWCFRGR*ET*SQTEPSEDVGNGES 257
           SSS  + ++++  R+W C R   ET    E  ED  + ES
Sbjct: 381 SSSSSSPEESRRFRKWSCLRKDPETTPSEEEDEDDEDEES 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,732,006
Number of Sequences: 28952
Number of extensions: 139718
Number of successful extensions: 303
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)