Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0695.Seq
         (895 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P45594 Cluster: Cofilin/actin-depolymerizing factor hom...    80   7e-14
UniRef50_Q9VWR1 Cluster: CG6873-PA; n=6; Endopterygota|Rep: CG68...    47   6e-04
UniRef50_P37167 Cluster: Actophorin; n=1; Acanthamoeba castellan...    41   0.049
UniRef50_A3KZ85 Cluster: Putative uncharacterized protein; n=3; ...    40   0.11 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.46 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.80 
UniRef50_Q7S6P9 Cluster: Putative uncharacterized protein NCU047...    36   1.8  
UniRef50_P78929 Cluster: Cofilin; n=2; Ascomycota|Rep: Cofilin -...    35   2.4  
UniRef50_UPI0000F2EB27 Cluster: PREDICTED: similar to En/Spm-lik...    33   7.4  
UniRef50_Q621J5 Cluster: Putative uncharacterized protein CBG024...    33   7.4  
UniRef50_Q4SNH0 Cluster: Chromosome 8 SCAF14543, whole genome sh...    33   9.8  

>UniRef50_P45594 Cluster: Cofilin/actin-depolymerizing factor
           homolog; n=10; Pancrustacea|Rep:
           Cofilin/actin-depolymerizing factor homolog - Drosophila
           melanogaster (Fruit fly)
          Length = 148

 Score = 80.2 bits (189), Expect = 7e-14
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ 124
           SSSFDALKKSLVGVQKYIQATDLSEAS+EAVEEKLRATDRQ
Sbjct: 108 SSSFDALKKSLVGVQKYIQATDLSEASREAVEEKLRATDRQ 148


>UniRef50_Q9VWR1 Cluster: CG6873-PA; n=6; Endopterygota|Rep:
           CG6873-PA - Drosophila melanogaster (Fruit fly)
          Length = 148

 Score = 47.2 bits (107), Expect = 6e-04
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRATDRQ 124
           SS+F  LK+   GVQK IQAT+  EA + AVEE+LR+ DR+
Sbjct: 108 SSTFAVLKREFPGVQKCIQATEPEEACRNAVEEQLRSLDRE 148


>UniRef50_P37167 Cluster: Actophorin; n=1; Acanthamoeba
           castellanii|Rep: Actophorin - Acanthamoeba castellanii
           (Amoeba)
          Length = 138

 Score = 40.7 bits (91), Expect = 0.049
 Identities = 17/36 (47%), Positives = 28/36 (77%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 109
           +S+ D++KK LVG+Q  +QATD +E S++AV E+ +
Sbjct: 99  TSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 134


>UniRef50_A3KZ85 Cluster: Putative uncharacterized protein; n=3;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Pseudomonas aeruginosa C3719
          Length = 642

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 13  RRSEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDD 192
           RR+ +   R  + HP  RP G   G +RR  P H  P  +   R R      +RH   D 
Sbjct: 434 RRTHRADLRRHQRHPGARPDGPQGGRQRRAVPLHLQPRGASLRRRRQRRTGGVRHPAADR 493

Query: 193 TRP 201
             P
Sbjct: 494 PGP 496


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.46
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = -1

Query: 466 RWLDELTAHQVLSGYW 419
           RW+DELTAH VLSGYW
Sbjct: 158 RWVDELTAHLVLSGYW 173


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.80
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -1

Query: 307 WYLPARTHKRSYHQ 266
           WYLPARTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q7S6P9 Cluster: Putative uncharacterized protein NCU04786.1;
            n=1; Neurospora crassa|Rep: Putative uncharacterized
            protein NCU04786.1 - Neurospora crassa
          Length = 1197

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +1

Query: 94   RREAPRHRSPINSIYTRARDETEPALRHSCPDDTRPRHH*PLSIITKE 237
            RREAP H+  + S +T   D  EP LRH  PD    R+   +S   +E
Sbjct: 973  RREAPTHKFIVFSQFTSMLDLVEPFLRHHLPDIKHVRYDGKMSNDARE 1020


>UniRef50_P78929 Cluster: Cofilin; n=2; Ascomycota|Rep: Cofilin -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 137

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 106
           SSS D L+++  G+   IQATD SE + E V EK+
Sbjct: 100 SSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134


>UniRef50_UPI0000F2EB27 Cluster: PREDICTED: similar to En/Spm-like
           transposon protein; n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to En/Spm-like transposon protein -
           Monodelphis domestica
          Length = 285

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 37  RSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPD-DTRPR 204
           R+   HP+ +     + GRR EAPR R P      RA     P    SCP   +RPR
Sbjct: 82  RAPRSHPTRKSQPRAAPGRRPEAPRSR-PTKKSRPRAAPGRRPKAPRSCPKRKSRPR 137


>UniRef50_Q621J5 Cluster: Putative uncharacterized protein CBG02464;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG02464 - Caenorhabditis
           briggsae
          Length = 857

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 31  PCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPD 189
           P   S   PS+RP+ S    R R  PRH S  +S  T+  D++   L+   P+
Sbjct: 379 PLLDSTPAPSERPVASSPSLRSRARPRHSSHSSST-TKKNDDSSETLKEETPE 430


>UniRef50_Q4SNH0 Cluster: Chromosome 8 SCAF14543, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 8 SCAF14543, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1309

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 62  TDLSEASQEAVEEKLRATDRQ*TAFTHELATKPNPLS-DTPALTTRGHDTTSRLVLLQRK 238
           T+     ++  E+K + + R   A     AT+P P++ D PA  TR    +S  V  +R 
Sbjct: 787 TEEKVLQEQKEEDKAKVSTRGRRAARRTAATQPTPMNDDVPARRTRSRSNSSNSVSSERS 846

Query: 239 TNSIN 253
            +SI+
Sbjct: 847 ASSIH 851


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,525,686
Number of Sequences: 1657284
Number of extensions: 16825918
Number of successful extensions: 39139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39123
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)