Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0695.Seq
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203...    33   0.40 
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393     31   0.94 
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    30   2.9  
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    29   5.0  
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318     29   6.6  
07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455...    29   6.6  
03_06_0479 + 34217170-34217172,34217337-34217786                       28   8.7  
03_01_0030 + 290232-291020                                             28   8.7  

>03_06_0480 +
           34218403-34218405,34219071-34219127,34220047-34220312,
           34220402-34220552
          Length = 158

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 14/36 (38%), Positives = 25/36 (69%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLR 109
           +SS +  KK L G+Q  +QATD  E S +A++++++
Sbjct: 123 ASSNERFKKELNGIQLEVQATDAGEISLDALKDRVK 158


>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
          Length = 158

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 103
           +SS D  K+ L G+Q  +QATD SE S + V+ +
Sbjct: 123 ASSKDRFKRELDGIQVELQATDPSEMSMDIVKSR 156


>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 369 AAPPFKPKRITASRQK*AGGGGTYP 295
           A PP +PKR+   R+K AGG G  P
Sbjct: 82  APPPPQPKRLQGGRKKGAGGHGKLP 106


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 329 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPVTT 430
           R +++  G+ G  A+V++W+ +  C  + +PV T
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPVAT 173


>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
          Length = 145

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 103
           +SS D  ++ L G+Q  IQATD SE S + +  +
Sbjct: 110 ASSKDRFRRELDGIQCEIQATDPSEMSLDIIRAR 143


>07_03_0356 -
           17142019-17142899,17145251-17145290,17145381-17145512,
           17145762-17145815,17145913-17145993,17146860-17146955,
           17147439-17147611,17147750-17147823,17148515-17148622,
           17148693-17148868,17149305-17149352,17150665-17150775,
           17152172-17152226,17153434-17153534,17154176-17154290,
           17155505-17155698
          Length = 812

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 19  SEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSI 135
           +E    R  E  P  R  G+ +GGRRR+A  +R  +  I
Sbjct: 5   AESCGSRGGESPPPPRTRGASAGGRRRKAEAYREVLRRI 43


>03_06_0479 + 34217170-34217172,34217337-34217786
          Length = 150

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEE 100
           +SS +  KK L GVQ  +QATD SE + + +++
Sbjct: 115 ASSNEGFKKELDGVQIDLQATDPSELTLDVLKD 147


>03_01_0030 + 290232-291020
          Length = 262

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = -2

Query: 498 PPRVFXFFFCLDGWTSSQPTRC*VVTGSYRHLQHKCATHIVTTAA--PPFKPKRITASRQ 325
           PPRV     C D WTS+ P R      +  H  H+   H  T+AA   P  P   T    
Sbjct: 3   PPRVSSLA-CRDRWTSAPPQR----RTNADH--HRTRAHRRTSAAAVTPLPPDHRTPMHP 55

Query: 324 K*AGG-GGTYPRGLTRGPTTS 265
             AG   GT P G    P T+
Sbjct: 56  SSAGAPPGTAPDGAAVVPPTA 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,450,839
Number of Sequences: 37544
Number of extensions: 514269
Number of successful extensions: 1329
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)