Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0695.Seq
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    30   2.6  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -2

Query: 555 NDGQXNCNTTHYRANWYRAPPRVFXFFFCLDGWTSSQPTRC*VVTGSYRHLQHKCATHIV 376
           +D    C   H+  + Y +  ++   ++  DGW +  P     V  S +HL+   A H V
Sbjct: 237 SDRDPYCPPVHWNESVYSSEKKLRVGYYIDDGWFTPTPALQRAVLESKKHLE--AAGHTV 294

Query: 375 TTAAPPFKP 349
               PP  P
Sbjct: 295 IPFYPPRLP 303


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -2

Query: 555 NDGQXNCNTTHYRANWYRAPPRVFXFFFCLDGWTSSQPTRC*VVTGSYRHLQHKCATHIV 376
           +D    C   H+  + Y +  ++   ++  DGW +  P     V  S +HL+   A H V
Sbjct: 302 SDRDPYCPPVHWNESVYSSEKKLRVGYYIDDGWFTPTPALQRAVLESKKHLE--AAGHTV 359

Query: 375 TTAAPPFKP 349
               PP  P
Sbjct: 360 IPFYPPRLP 368


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 190 RQGRSVGERVRFRRELVCKCC 128
           R+GR  G+ ++FR E VC+CC
Sbjct: 196 RKGR--GKNIKFRTEKVCRCC 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,825
Number of Sequences: 27780
Number of extensions: 379535
Number of successful extensions: 757
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)