Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0695.Seq
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s...    31   1.4  
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s...    30   1.8  
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s...    30   1.8  
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s...    30   2.4  
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s...    30   2.4  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    29   5.5  

>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
           strong similarity to SP|P30175 Actin-depolymerizing
           factor (ADF) {Lilium longiflorum}; contains Pfam profile
           PF00241: Cofilin/tropomyosin-type actin-binding protein
          Length = 140

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 106
           +SS D  K+ + G+Q  +QATD SE S + ++ +L
Sbjct: 104 ASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRL 138


>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
           strong similarity to pollen specific
           actin-depolymerizing factor 2 [Nicotiana tabacum]
           GI:22857914; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 137

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 103
           +SS D  K+ L G+Q  +QATD SE S + ++ +
Sbjct: 102 ASSKDRFKRELDGIQVELQATDPSEMSLDIIKSR 135


>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
           similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
           (ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
           profile PF00241: Cofilin/tropomyosin-type actin-binding
           protein
          Length = 133

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 106
           SS+ D  K+ L G+Q    ATDL++ S +A+  ++
Sbjct: 98  SSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132


>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
           strong similarity to pollen specific
           actin-depolymerizing factor 2 [Nicotiana tabacum]
           GI:22857914; contains Pfam profile PF00241:
           Cofilin/tropomyosin-type actin-binding protein
          Length = 130

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 103
           +SS D  K+ L G+Q  +QATD SE S + ++ +
Sbjct: 95  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKSR 128


>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
           strong similarity to SP|P30175 Actin-depolymerizing
           factor (ADF) {Lilium longiflorum}; contains Pfam profile
           PF00241: Cofilin/tropomyosin-type actin-binding protein
          Length = 140

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 2   SSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 106
           +SS D  K+ L G+Q  +QATD SE S + ++ ++
Sbjct: 104 ASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRV 138


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 67  PLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSCPDDTRP 201
           PL + SG     +    SP N   TRA D T PA+     D+ +P
Sbjct: 307 PLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQP 351


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,870,336
Number of Sequences: 28952
Number of extensions: 368407
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)