Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0693.Seq
         (497 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2HA35 Cluster: Putative uncharacterized protein; n=1; ...    33   2.7  
UniRef50_UPI00015C4359 Cluster: DNA helicase-like protein, putat...    32   6.2  
UniRef50_Q1Q4U8 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  

>UniRef50_Q2HA35 Cluster: Putative uncharacterized protein; n=1;
            Chaetomium globosum|Rep: Putative uncharacterized protein
            - Chaetomium globosum (Soil fungus)
          Length = 2308

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +1

Query: 76   LGYYLNFMYILWITNKETATQPSLAPSYINMI 171
            LG++  F +++WI   ET T+P L+P ++ ++
Sbjct: 1966 LGHHHFFKWLIWIVWAETETEPYLSPQFVRLV 1997


>UniRef50_UPI00015C4359 Cluster: DNA helicase-like protein,
           putative; n=1; Streptococcus gordonii str. Challis
           substr. CH1|Rep: DNA helicase-like protein, putative -
           Streptococcus gordonii str. Challis substr. CH1
          Length = 826

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -1

Query: 434 SSLLQILLIA*RVAFCRLQNKR-VQLCFRRYFLSDHFLWESKPLHYVTRYGTRLFGFFFA 258
           S L +IL +A  + F  L NK  ++L +R + L   + ++ KPL+ V+     L     +
Sbjct: 39  SDLEKILSLA--IYFVCLDNKELIKLGYRLFILYSQYTYDYKPLYEVS-LNKGLIPI--S 93

Query: 257 HHTTAVLRTYVAPNCSYTFFNLCYNFPYIIILIY 156
           H  + VL   +    SYTFFN   +  YI   IY
Sbjct: 94  HFISDVLEYDIKYGNSYTFFNNLESKLYITNNIY 127


>UniRef50_Q1Q4U8 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Kuenenia stuttgartiensis|Rep: Putative
           uncharacterized protein - Candidatus Kuenenia
           stuttgartiensis
          Length = 332

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = -1

Query: 380 QNKRVQLCFRRYFLSDHFLWESKPLHYVTRYGTRLFGFFFAHHTTAVLRTYVAPNCSYTF 201
           Q K    CF  + L +  +  +     +    + + G F  +H+     + +  NC ++F
Sbjct: 13  QQKNADKCFALFLLINSIIASAFVAGILVSVNSYIKGIFNTYHSATCCGS-ICLNCLFSF 71

Query: 200 FNLCYNFPYIIILIY 156
           + LC  F ++ + IY
Sbjct: 72  YTLCLLFYFLCMGIY 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,225,559
Number of Sequences: 1657284
Number of extensions: 7162046
Number of successful extensions: 13350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13349
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)