Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0693.Seq
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   4.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.3  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.4  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 368 VQLCFRRYFLSDHFLWESKPL 306
           + LCF RY    H L++ KP+
Sbjct: 662 IDLCFGRYDTPQHILYDDKPV 682


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 252 MVSEKEAKQPGTVTRYVMQRFTLPQEVIT*KIT 350
           ++  +EAK  G + +Y  + F LP+ +I   +T
Sbjct: 80  IIPTREAKNIGIIDKYYKKNFILPKTLIRFSLT 112


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 269 FFFAHHTTAVLRTYVAPNCSYTFFN 195
           F FA  T      Y+  NC+++FF+
Sbjct: 450 FLFASTTAKTSNAYLGWNCTFSFFS 474


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 230 TFLVPLSYGERKRSQTAWYRNALRNAAVY 316
           TF  P++YG++  S   W R    ++ V+
Sbjct: 744 TFFAPMTYGDKSLSVDEWTRRKWLDSWVF 772


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 269 FFFAHHTTAVLRTYVAPNCSY 207
           F+F H++ + +  +  PN SY
Sbjct: 115 FYFVHYSNSPIEPFAKPNISY 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,748,324
Number of Sequences: 5004
Number of extensions: 33215
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)