Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0693.Seq
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58297| Best HMM Match : DUF630 (HMM E-Value=6.3)                    29   2.1  
SB_38005| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_58297| Best HMM Match : DUF630 (HMM E-Value=6.3)
          Length = 194

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 374 KRVQLCFRRYFLSDHFLWESK--PLHYVTRYGTRLFGFFFAHHTTAVLRTYVAPNCSYTF 201
           + +    ++Y   +H LW +    +HY+TRY TR    +   + T  +  YV   C  T 
Sbjct: 117 RAISRSLKKYRDYNHELWNNDVGQVHYMTRYVTRYGSHYVTRYFTRYVSRYVT-RC-VTR 174

Query: 200 FNLCYNFPYII 168
           + + Y   Y+I
Sbjct: 175 YVIPYVTRYVI 185


>SB_38005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 347 YFLSDHFLWESKPLHYVTRYGTRLFGFFFAHHTTAVLRTYVAPN 216
           YF S     +  P  Y  R     FG+  +H+    L++Y+ PN
Sbjct: 34  YFSSSSMSHKETPEQYARRNEIMRFGYPESHNNKYELQSYILPN 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,195
Number of Sequences: 59808
Number of extensions: 227498
Number of successful extensions: 358
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)