Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0693.Seq
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical
           protein R74.2 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -1

Query: 374 KRVQLCFRRYFLSDHFLWESKPLHYVTRYGTRLFGFFFAHHTTAVLRTYVAPNCSYT 204
           KR  + +RR +   H+ W+  P  Y+ R      G  + +       TY  P+  YT
Sbjct: 130 KRPVVAYRRGYFFQHYPWDRLPRRYLLRP-----GMTYVYPPQYTFATYRYPHLPYT 181


>Z99286-2|CAH60793.1|  310|Caenorhabditis elegans Hypothetical
           protein Y7A9C.8 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 213 FIYLFQFMLQFSLHYHINI*RRQRWLSGSFFIRYPQYIH 97
           FI  F  +L FS+ ++I I    R LS + + +   YIH
Sbjct: 187 FILFFHALLFFSMPFYIPIMISVRKLSSTQYCKVQSYIH 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,436,248
Number of Sequences: 27780
Number of extensions: 179462
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)