Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0693.Seq
         (497 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.44 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 254 GERKRSQTAWYRNALRNAAVYSPTRSDHLKNNV*NITVLSYFEVGKTQHV 403
           G  KRSQ    R+A R  +      S  ++NN+   T  +Y E+ K Q V
Sbjct: 356 GGNKRSQVFRGRDANRQNSCNIYNASSRMENNLRGETQSNYREMEKRQSV 405


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 43  FNIEIV*IETGLGYYLNFMYILWITNKETAT 135
           FN+ I   ++G     NFM+I  + N+ TA+
Sbjct: 297 FNLTIKYYKSGSTVPFNFMFIADLNNQSTAS 327


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 308 LHYVTRYGTRLFGFFFAHHTTAVLRT 231
           LH V  YG +++     H T    +T
Sbjct: 249 LHQVAHYGEKVYKCTLCHETFGSKKT 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,943
Number of Sequences: 438
Number of extensions: 2592
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)