Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0693.Seq
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro...    27   7.0  
At3g53400.1 68416.m05893 expressed protein                             27   9.3  
At1g53470.1 68414.m06061 mechanosensitive ion channel domain-con...    27   9.3  

>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
           [Rhodococcus sp.] GI:8926386; contains Interpro entry
           IPR000379
          Length = 392

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -1

Query: 308 LHYVTRYGTRLFGF---FFAHHTTAVLRTYVAPN 216
           +H+V  YGT L GF    FAHH    +++ V  N
Sbjct: 97  VHHVHLYGTSLGGFLAQLFAHHRPRRVKSLVLSN 130


>At3g53400.1 68416.m05893 expressed protein
          Length = 466

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 281 RLFGFFFAHHTTAVLRTYV-APNCSYTF 201
           + F  +F HH T++L +YV +P  ++ +
Sbjct: 337 KAFNSYFVHHNTSILTSYVKSPGVTFIY 364


>At1g53470.1 68414.m06061 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 881

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 347 YFLSDHFLWESKPLHYVTRYGTR 279
           YF+  +FLW  K L++V  YG R
Sbjct: 318 YFVESNFLWRKKVLYFV--YGIR 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,618
Number of Sequences: 28952
Number of extensions: 156830
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)