Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0691.Seq
(914 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P0AAU6 Cluster: Uncharacterized protein ybfB; n=3; cell... 109 1e-22
UniRef50_Q7DC26 Cluster: RhsC protein in rhs element; n=1; Esche... 63 8e-09
UniRef50_Q31U53 Cluster: Putative uncharacterized protein; n=2; ... 51 5e-05
UniRef50_P16919 Cluster: Protein rhsD precursor; n=144; Enteroba... 50 6e-05
UniRef50_P77779 Cluster: Uncharacterized protein ybfO; n=18; Ent... 50 1e-04
UniRef50_Q57ML0 Cluster: Putative uncharacterized protein yibJ; ... 40 0.067
UniRef50_Q08932 Cluster: Ribosome assembly 1 protein; n=2; Sacch... 39 0.20
UniRef50_Q7NY44 Cluster: Probable Rhs-family protein; n=2; Chrom... 37 0.62
UniRef50_Q7MZK7 Cluster: Similar to the N-terminal region of Rhs... 36 1.1
UniRef50_Q00WM6 Cluster: Ubiquitin-protein ligase 2; n=1; Ostreo... 36 1.4
UniRef50_Q8U3F9 Cluster: Integral membrane glycosyltransferase; ... 36 1.9
UniRef50_Q395C2 Cluster: Rhs family protein; n=1; Burkholderia s... 35 2.5
UniRef50_Q4ZLF3 Cluster: YD repeat; n=3; Pseudomonas syringae pv... 35 3.3
UniRef50_Q58715 Cluster: Uncharacterized sodium-dependent transp... 35 3.3
UniRef50_Q7MZK5 Cluster: Similar to Rhs-family protein; n=2; Gam... 34 4.4
UniRef50_Q6LUC6 Cluster: Hypothetical nucleotidyltransferase; n=... 34 4.4
UniRef50_Q6LUC4 Cluster: Putative uncharacterized protein; n=1; ... 34 4.4
UniRef50_Q6CZ75 Cluster: Rhs-family protein; n=3; Pectobacterium... 34 4.4
UniRef50_A6GLW0 Cluster: Rhs family protein; n=1; Limnobacter sp... 34 4.4
UniRef50_UPI0000F2EBE8 Cluster: PREDICTED: similar to Ac1147; n=... 34 5.8
UniRef50_Q74QM5 Cluster: Rhs family protein; n=7; Yersinia|Rep: ... 34 5.8
UniRef50_Q4K3M9 Cluster: Rhs family protein; n=2; Pseudomonas fl... 34 5.8
UniRef50_Q2SFR5 Cluster: Rhs family protein; n=2; Hahella chejue... 34 5.8
UniRef50_Q13ML3 Cluster: YD repeat protein; n=1; Burkholderia xe... 34 5.8
UniRef50_A7K3Q8 Cluster: Rhs family protein; n=5; Vibrio|Rep: Rh... 34 5.8
UniRef50_A2QYX4 Cluster: Contig An12c0080, complete genome; n=1;... 34 5.8
UniRef50_UPI000023DD5E Cluster: hypothetical protein FG03877.1; ... 33 7.7
UniRef50_Q2SPP2 Cluster: Rhs family protein; n=3; Hahella chejue... 33 7.7
UniRef50_Q8D1M9 Cluster: Rhs-like core protein; n=10; Enterobact... 33 7.7
UniRef50_A7MQ44 Cluster: Putative uncharacterized protein; n=2; ... 33 7.7
UniRef50_A1TQS0 Cluster: YD repeat protein; n=1; Acidovorax aven... 33 7.7
UniRef50_A1TJG7 Cluster: YD repeat protein; n=3; Acidovorax aven... 33 7.7
UniRef50_A1FBV2 Cluster: RHS protein; n=30; Pseudomonas|Rep: RHS... 33 7.7
>UniRef50_P0AAU6 Cluster: Uncharacterized protein ybfB; n=3;
cellular organisms|Rep: Uncharacterized protein ybfB -
Escherichia coli O157:H7
Length = 108
Score = 109 bits (261), Expect = 1e-22
Identities = 56/58 (96%), Positives = 56/58 (96%), Gaps = 2/58 (3%)
Frame = -2
Query: 262 ILF--MHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRI 95
ILF MHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRI
Sbjct: 19 ILFFSMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRI 76
Score = 49.6 bits (113), Expect = 1e-04
Identities = 23/23 (100%), Positives = 23/23 (100%)
Frame = -3
Query: 321 MKYIIFLFRAIWLALSLLILFFS 253
MKYIIFLFRAIWLALSLLILFFS
Sbjct: 1 MKYIIFLFRAIWLALSLLILFFS 23
>UniRef50_Q7DC26 Cluster: RhsC protein in rhs element; n=1;
Escherichia coli O157:H7|Rep: RhsC protein in rhs
element - Escherichia coli O157:H7
Length = 73
Score = 63.3 bits (147), Expect = 8e-09
Identities = 35/55 (63%), Positives = 39/55 (70%)
Frame = -2
Query: 718 QIYGGKSRFYHQYLCVPRW*RGLYLWWPKTNGENQKEMVYGGQVKQVMIQKKLLA 554
QIYGG + + V + +G L KTNGENQKEMVYGGQVKQVMIQKKLLA
Sbjct: 6 QIYGGIRSIINIF--VSQMVKGTILVVAKTNGENQKEMVYGGQVKQVMIQKKLLA 58
Score = 41.5 bits (93), Expect = 0.029
Identities = 27/62 (43%), Positives = 34/62 (54%)
Frame = -3
Query: 693 SIINIFVSPDGKGDYTCGGPRPTGRIKRRWSMGAR*SK**YKRSCWPVVTSLKPIIVVWR 514
SIINIFVS KG + G ++ G + + ++ VVTSLKPIIVVWR
Sbjct: 13 SIINIFVSQMVKGTILVVA-KTNGENQKEMVYGGQVKQVMIQKKLLAVVTSLKPIIVVWR 71
Query: 513 TV 508
TV
Sbjct: 72 TV 73
>UniRef50_Q31U53 Cluster: Putative uncharacterized protein; n=2;
Shigella boydii|Rep: Putative uncharacterized protein -
Shigella boydii serotype 4 (strain Sb227)
Length = 927
Score = 50.8 bits (116), Expect = 5e-05
Identities = 18/25 (72%), Positives = 23/25 (92%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GLKGGWNFY YPL+P++++DP
Sbjct: 875 QDPIGLKGGWNFYQYPLSPVNSMDP 899
>UniRef50_P16919 Cluster: Protein rhsD precursor; n=144;
Enterobacteriaceae|Rep: Protein rhsD precursor -
Escherichia coli (strain K12)
Length = 1426
Score = 50.4 bits (115), Expect = 6e-05
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GLKGGWN Y YPLNP+ IDP
Sbjct: 1231 QDPMGLKGGWNLYQYPLNPLQQIDP 1255
>UniRef50_P77779 Cluster: Uncharacterized protein ybfO; n=18;
Enterobacteriaceae|Rep: Uncharacterized protein ybfO -
Escherichia coli (strain K12)
Length = 477
Score = 49.6 bits (113), Expect = 1e-04
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNID 794
QDP GLKGGWNFY YPLNP+ ID
Sbjct: 298 QDPIGLKGGWNFYQYPLNPVQYID 321
>UniRef50_Q57ML0 Cluster: Putative uncharacterized protein yibJ;
n=1; Salmonella choleraesuis|Rep: Putative
uncharacterized protein yibJ - Salmonella choleraesuis
Length = 245
Score = 40.3 bits (90), Expect = 0.067
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QD GL GG N Y YPLNP+ NIDP
Sbjct: 54 QDSIGLSGGLNPYTYPLNPVVNIDP 78
>UniRef50_Q08932 Cluster: Ribosome assembly 1 protein; n=2;
Saccharomyces cerevisiae|Rep: Ribosome assembly 1
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 381
Score = 38.7 bits (86), Expect = 0.20
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 20 SGLPGPLGQGEHADSFSVARVRTQDNPYANNV*YSPYKY*SNKEYYACWKTYYHHSIRH 196
S LP P G +D + ++++ Q A N YSP+ Y ++ Y W T Y + H
Sbjct: 15 SRLPKPTYSGTLSDGYDESKIKRQKTDSAFNAAYSPHMYPNSPYYEGSWNTGYTPQLHH 73
>UniRef50_Q7NY44 Cluster: Probable Rhs-family protein; n=2;
Chromobacterium violaceum|Rep: Probable Rhs-family
protein - Chromobacterium violaceum
Length = 1513
Score = 37.1 bits (82), Expect = 0.62
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
+DP GLKGG N Y Y LNPI +DP
Sbjct: 1365 RDPIGLKGGINIYGYALNPIVWMDP 1389
>UniRef50_Q7MZK7 Cluster: Similar to the N-terminal region of RhsC
protein; n=2; Enterobacteriaceae|Rep: Similar to the
N-terminal region of RhsC protein - Photorhabdus
luminescens subsp. laumondii
Length = 174
Score = 36.3 bits (80), Expect = 1.1
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GLKGG N Y Y NP++ IDP
Sbjct: 22 DPIGLKGGLNLYQYAPNPVTWIDP 45
>UniRef50_Q00WM6 Cluster: Ubiquitin-protein ligase 2; n=1;
Ostreococcus tauri|Rep: Ubiquitin-protein ligase 2 -
Ostreococcus tauri
Length = 2639
Score = 35.9 bits (79), Expect = 1.4
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 649 IVPFTIWGHKDIDDRNGISPHISGTAFFHQFRPIECS---GLMHFSV 780
+ PF W H+DID G+SP T F+P +C G+ H +
Sbjct: 2522 VAPFEGWMHQDIDRIGGVSPSSQQTGRASDFKPFKCQIELGVSHIRI 2568
>UniRef50_Q8U3F9 Cluster: Integral membrane glycosyltransferase;
n=2; Pyrococcus|Rep: Integral membrane
glycosyltransferase - Pyrococcus furiosus
Length = 700
Score = 35.5 bits (78), Expect = 1.9
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = -2
Query: 316 IYYFFIQSYM----AGFIAFNTILFMHRLSLLDSTRDVSELISLMSYGMMVICFPTGIVF 149
+YY+F+Q + ++ F L++ +LS+ + D+ L+ L S G+MV+ P +
Sbjct: 221 LYYYFVQYALLPAFTNYMLFLFALYILQLSIRERKPDIILLLGLTS-GVMVVTHPYQYML 279
Query: 148 FIALIFIGTVS 116
F A+ F T+S
Sbjct: 280 FQAVAFFTTIS 290
>UniRef50_Q395C2 Cluster: Rhs family protein; n=1; Burkholderia sp.
383|Rep: Rhs family protein - Burkholderia sp. (strain
383) (Burkholderia cepacia (strain ATCC 17760/ NCIB 9086
/ R18194))
Length = 190
Score = 35.1 bits (77), Expect = 2.5
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GLKGG N Y Y NP++ DP
Sbjct: 44 QDPIGLKGGANSYVYAHNPVTLSDP 68
>UniRef50_Q4ZLF3 Cluster: YD repeat; n=3; Pseudomonas syringae pv.
syringae B728a|Rep: YD repeat - Pseudomonas syringae pv.
syringae (strain B728a)
Length = 451
Score = 34.7 bits (76), Expect = 3.3
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GL GG+N Y Y NP + IDP
Sbjct: 286 QDPIGLLGGFNLYGYCRNPTAWIDP 310
>UniRef50_Q58715 Cluster: Uncharacterized sodium-dependent
transporter MJ1319; n=6; Euryarchaeota|Rep:
Uncharacterized sodium-dependent transporter MJ1319 -
Methanococcus jannaschii
Length = 492
Score = 34.7 bits (76), Expect = 3.3
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Frame = -2
Query: 295 SYMAGFIAFNTILFMHRLSLLDSTRDVSELISL--MSYGMMVICFP-----TGIVFFIAL 137
S++AGF F T+ +M S + + VSE I L +++ + P GIVFF+AL
Sbjct: 269 SFLAGFAVFGTLGYMSYTSGIPLDKAVSEGIGLAFVTFPKALSLLPFASRLFGIVFFLAL 328
Query: 136 IFIGTVSDI 110
+F G S +
Sbjct: 329 VFAGISSAV 337
>UniRef50_Q7MZK5 Cluster: Similar to Rhs-family protein; n=2;
Gammaproteobacteria|Rep: Similar to Rhs-family protein -
Photorhabdus luminescens subsp. laumondii
Length = 1424
Score = 34.3 bits (75), Expect = 4.4
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GL GG N Y Y NP+S IDP
Sbjct: 1272 DPIGLAGGLNLYTYAPNPMSWIDP 1295
>UniRef50_Q6LUC6 Cluster: Hypothetical nucleotidyltransferase; n=1;
Photobacterium profundum|Rep: Hypothetical
nucleotidyltransferase - Photobacterium profundum
(Photobacterium sp. (strain SS9))
Length = 1352
Score = 34.3 bits (75), Expect = 4.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GL GG N Y Y NPI +DP
Sbjct: 1132 QDPIGLLGGINHYRYAPNPIQWVDP 1156
>UniRef50_Q6LUC4 Cluster: Putative uncharacterized protein; n=1;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 532
Score = 34.3 bits (75), Expect = 4.4
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GL GG N Y Y NPI +DP
Sbjct: 334 QDPIGLLGGINHYRYAPNPIQWVDP 358
>UniRef50_Q6CZ75 Cluster: Rhs-family protein; n=3; Pectobacterium
atrosepticum|Rep: Rhs-family protein - Erwinia carotovora
subsp. atroseptica (Pectobacterium atrosepticum)
Length = 1427
Score = 34.3 bits (75), Expect = 4.4
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP G++GG N Y Y NP++ IDP
Sbjct: 1271 DPIGIRGGLNLYAYVKNPVNWIDP 1294
>UniRef50_A6GLW0 Cluster: Rhs family protein; n=1; Limnobacter sp.
MED105|Rep: Rhs family protein - Limnobacter sp. MED105
Length = 1598
Score = 34.3 bits (75), Expect = 4.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 892 PRCRAVIPLQDPDGLKGGWNFYXYPLNPISNIDP 791
P C QDP GL GG N Y Y NP++ +DP
Sbjct: 1425 PNC-GQFTTQDPIGLLGGMNTYQYAPNPMTWVDP 1457
>UniRef50_UPI0000F2EBE8 Cluster: PREDICTED: similar to Ac1147;
n=1; Monodelphis domestica|Rep: PREDICTED: similar to
Ac1147 - Monodelphis domestica
Length = 510
Score = 33.9 bits (74), Expect = 5.8
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 81 TRATLKESACS-PWPRGPGNPLKLLRAG 1
TRATL SAC+ P P G GNPL +R G
Sbjct: 9 TRATLTGSACAYPTPAGAGNPLNPIRDG 36
>UniRef50_Q74QM5 Cluster: Rhs family protein; n=7; Yersinia|Rep: Rhs
family protein - Yersinia pestis
Length = 1438
Score = 33.9 bits (74), Expect = 5.8
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -2
Query: 892 PRCRAVIPLQDPDGLKGGWNFYXYPLNPISNIDP 791
P C I QDP GLKGG N Y + +N + +DP
Sbjct: 1337 PACGVFIS-QDPIGLKGGLNPYQFAVNTLGWVDP 1369
>UniRef50_Q4K3M9 Cluster: Rhs family protein; n=2; Pseudomonas
fluorescens group|Rep: Rhs family protein - Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477)
Length = 1486
Score = 33.9 bits (74), Expect = 5.8
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GL GG N Y Y NPI IDP
Sbjct: 1324 DPIGLAGGLNLYQYAPNPIGWIDP 1347
>UniRef50_Q2SFR5 Cluster: Rhs family protein; n=2; Hahella
chejuensis KCTC 2396|Rep: Rhs family protein - Hahella
chejuensis (strain KCTC 2396)
Length = 471
Score = 33.9 bits (74), Expect = 5.8
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GL GG N Y Y LNP +DP
Sbjct: 108 QDPVGLLGGDNNYQYALNPTGWVDP 132
>UniRef50_Q13ML3 Cluster: YD repeat protein; n=1; Burkholderia
xenovorans LB400|Rep: YD repeat protein - Burkholderia
xenovorans (strain LB400)
Length = 1531
Score = 33.9 bits (74), Expect = 5.8
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GL GG N Y Y NP+S IDP
Sbjct: 1378 DPIGLAGGVNLYRYAPNPMSWIDP 1401
>UniRef50_A7K3Q8 Cluster: Rhs family protein; n=5; Vibrio|Rep: Rhs
family protein - Vibrio sp. Ex25
Length = 1384
Score = 33.9 bits (74), Expect = 5.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP + GG N Y Y +NPI IDP
Sbjct: 1104 QDPISIAGGINHYQYAINPIQWIDP 1128
>UniRef50_A2QYX4 Cluster: Contig An12c0080, complete genome; n=1;
Aspergillus niger|Rep: Contig An12c0080, complete genome
- Aspergillus niger
Length = 5054
Score = 33.9 bits (74), Expect = 5.8
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 241 SLLDSTRDVSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDII 107
+LL +DV+EL + +Y +M++C P G+ + +F V D +
Sbjct: 2366 TLLSGLQDVAELKGVDTYPLMLVCEPDGVSLHLTAVFDPAVLDAV 2410
>UniRef50_UPI000023DD5E Cluster: hypothetical protein FG03877.1; n=1;
Gibberella zeae PH-1|Rep: hypothetical protein FG03877.1
- Gibberella zeae PH-1
Length = 1127
Score = 33.5 bits (73), Expect = 7.7
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 307 NNIFHYITPVNTNLIKRPMLFPEHFILHVSKESLDQSWQFL-NSPKFIGVNIS 462
+NI H ++P N + + P H+ +H S E++DQS + + NSP F G +++
Sbjct: 855 HNISHSLSPTLHNAGFQELGLPHHYQIHES-ENVDQSVELIINSPDFGGASVT 906
>UniRef50_Q2SPP2 Cluster: Rhs family protein; n=3; Hahella chejuensis
KCTC 2396|Rep: Rhs family protein - Hahella chejuensis
(strain KCTC 2396)
Length = 1434
Score = 33.5 bits (73), Expect = 7.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GL GG N Y Y NP+ +DP
Sbjct: 1187 QDPIGLLGGANAYQYAPNPVGWVDP 1211
>UniRef50_Q8D1M9 Cluster: Rhs-like core protein; n=10;
Enterobacteriaceae|Rep: Rhs-like core protein - Yersinia
pestis
Length = 1514
Score = 33.5 bits (73), Expect = 7.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GL+GG N Y Y NP+S +DP
Sbjct: 1353 DPIGLEGGLNPYGYVHNPVSWVDP 1376
>UniRef50_A7MQ44 Cluster: Putative uncharacterized protein; n=2;
Enterobacter sakazakii ATCC BAA-894|Rep: Putative
uncharacterized protein - Enterobacter sakazakii ATCC
BAA-894
Length = 1339
Score = 33.5 bits (73), Expect = 7.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
QDP GL GG N Y Y NP+ +DP
Sbjct: 1185 QDPIGLAGGINLYQYAPNPLVWVDP 1209
>UniRef50_A1TQS0 Cluster: YD repeat protein; n=1; Acidovorax avenae
subsp. citrulli AAC00-1|Rep: YD repeat protein -
Acidovorax avenae subsp. citrulli (strain AAC00-1)
Length = 1602
Score = 33.5 bits (73), Expect = 7.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 865 QDPDGLKGGWNFYXYPLNPISNIDP 791
+DP G GG N + YPL+P S IDP
Sbjct: 1438 EDPIGFLGGINTFIYPLDPYSWIDP 1462
>UniRef50_A1TJG7 Cluster: YD repeat protein; n=3; Acidovorax avenae
subsp. citrulli AAC00-1|Rep: YD repeat protein -
Acidovorax avenae subsp. citrulli (strain AAC00-1)
Length = 1604
Score = 33.5 bits (73), Expect = 7.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GL GG N + Y NP+S IDP
Sbjct: 1462 DPIGLAGGLNLHGYAANPLSWIDP 1485
>UniRef50_A1FBV2 Cluster: RHS protein; n=30; Pseudomonas|Rep: RHS
protein - Pseudomonas putida W619
Length = 1411
Score = 33.5 bits (73), Expect = 7.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 862 DPDGLKGGWNFYXYPLNPISNIDP 791
DP GL+GG N + Y +NPI IDP
Sbjct: 1250 DPIGLRGGVNLFRYNVNPIYWIDP 1273
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 995,104,997
Number of Sequences: 1657284
Number of extensions: 22560492
Number of successful extensions: 55379
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 52847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55369
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -