Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0691.Seq
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1299 - 35553666-35554481,35554594-35554623                       33   0.24 
05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419           31   1.3  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           31   1.3  
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    29   5.2  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    29   5.2  
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365...    29   6.8  

>02_05_1299 - 35553666-35554481,35554594-35554623
          Length = 281

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 827 PVPVESDLKYRSIGIXTLKCINPLHSMGR-NW*KKAVPDIWGEIPFLSSISL 675
           P  VE D+ Y       LKC+  L  M   +W     P  +G++P LSS+SL
Sbjct: 228 PQLVELDINYGDFEFVELKCLPKLRHMAYVHWDCHGDPLSFGDVPLLSSLSL 279


>05_01_0535 - 4610339-4610707,4611910-4613049,4613342-4613419
          Length = 528

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 658 RGLYLWWPKTNGENQKEMVYGGQVKQVM 575
           RGL  +WP TN  +QKEM++ G++++V+
Sbjct: 352 RGLLKYWPVTN--SQKEMMFLGELEEVL 377


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = -2

Query: 658 RGLYLWWPKTNGENQKEMVYGGQVKQVM 575
           RGL  +WP TN  +QKEM++ G++++V+
Sbjct: 321 RGLLKYWPVTN--SQKEMMFLGELEEVL 346


>11_05_0010 - 18356835-18357080,18357475-18357672,18357780-18358046,
            18358870-18359067,18359151-18359417,18359524-18359724,
            18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 692  LSSISLCPQMVKGTILVVAQDQRGESKGDGLWGPGKASNDT 570
            L S+++C  +V  ++     D  G+    GLWG    SN T
Sbjct: 1110 LESVTICSNIVIHSLTFSYNDHNGDHHLAGLWGSHGGSNQT 1150


>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
            29288625-29288903,29289047-29289122,29289725-29289787,
            29292116-29292164,29292413-29292504,29293017-29293068,
            29293209-29293271,29293382-29293431,29293941-29294016,
            29294444-29294656,29294763-29294869,29294966-29295074,
            29295489-29295689,29295773-29296033,29296154-29296171,
            29296287-29296397,29296755-29297030,29297108-29297382,
            29297814-29298165,29298371-29298655,29298715-29299261,
            29301658-29301781,29301871-29301946,29302062-29302136,
            29302300-29302353,29302833-29302892,29302977-29303093,
            29303228-29303361,29303480-29303682,29303879-29303976,
            29304358-29304461,29304537-29304702,29304803-29304925,
            29305047-29305129,29305217-29305358,29305523-29305549,
            29305784-29305854,29305930-29306518
          Length = 2046

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 217  VSELISLMSYGMMVICFPTGIVFFIALIFIGTVSDIIGVRIVLGPHARY 71
            + E ++ + +G +V+  P   +  I  +  GT++ +IG+ I   PH +Y
Sbjct: 1189 LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGI-IASLPHEQY 1236


>07_03_0111 +
           13535912-13535972,13536081-13536142,13536418-13536510,
           13537577-13537649,13537876-13538265,13538337-13538404,
           13539334-13539375,13540211-13540735,13540817-13540974,
           13541078-13541636,13542438-13542500,13542579-13542680,
           13542779-13543096,13543175-13543267,13543489-13543590,
           13543678-13543782,13544190-13544323,13545097-13545280,
           13545701-13545832,13546215-13546327,13546468-13546558,
           13547138-13549339
          Length = 1889

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 910 PPPPIMPRCRAVIPLQDPDGLKGG 839
           PPPP  P+  A  P ++P G K G
Sbjct: 127 PPPPPSPKDAAADPAKEPSGSKAG 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,732,017
Number of Sequences: 37544
Number of extensions: 621227
Number of successful extensions: 1616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)