Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0691.Seq
(914 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081) 33 0.43
SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.74
SB_20248| Best HMM Match : GPS (HMM E-Value=1.5) 31 1.3
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 30 2.3
SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72) 30 3.0
SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14) 30 3.0
SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054) 30 3.0
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 29 4.0
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0) 29 5.2
SB_36940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_8819| Best HMM Match : I-set (HMM E-Value=0) 29 6.9
SB_50799| Best HMM Match : I-set (HMM E-Value=0) 28 9.2
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1130
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 703 KSRFYHQYLCVPRW*RGLYLWWPKTNGENQKEMVYGGQVKQV 578
K++ YH YLC+P + + W P G +E+VY G QV
Sbjct: 764 KAQTYHHYLCIPAE-KPIEEWRPSELGHKLEEVVYCGDYGQV 804
>SB_57709| Best HMM Match : RVT_1 (HMM E-Value=0.00081)
Length = 754
Score = 32.7 bits (71), Expect = 0.43
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 87 PRTILTPIMSDTVPINIRAIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
P TIL + P AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 316 PNTILKTFSFELAP---SAIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 371
>SB_30350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 31.9 bits (69), Expect = 0.74
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = -3
Query: 90 WVRTRATLKESACSPWPRGPGNPLKLLRAG 1
W RTRATL P P G GN +K RAG
Sbjct: 3 WGRTRATLTGQRVFPSPEGGGNLVKHRRAG 32
>SB_20248| Best HMM Match : GPS (HMM E-Value=1.5)
Length = 555
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P+ KH + D+RLI SLTS+V E L + R++
Sbjct: 475 AIARPLPMSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 515
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +1
Query: 508 NSSPHNYYRFQ----RGHNGPAASFVSLLALPG-PHRPSPFDSPRWSWA 639
N PH+ YR + +GH G + +L++L G PH P F++ + +W+
Sbjct: 45 NDLPHSAYRLRPIMHQGH-GATTTCSTLISLSGWPHNPLTFNTDKLAWS 92
>SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -3
Query: 84 RTRATLKESACSPWPRGPGNPLKLLRAG 1
RTRATL S P P G GN +K RAG
Sbjct: 8 RTRATLTVSRVFPSPEGVGNLVKHRRAG 35
>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 404 AIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 444
>SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)
Length = 485
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 223 AIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 263
>SB_46102| Best HMM Match : RVT_1 (HMM E-Value=2.6e-14)
Length = 595
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 226 AIARPLPKSKHAKTVANDVRLI-SLTSQVAKIMEGLTLSRML 266
>SB_37723| Best HMM Match : RVT_1 (HMM E-Value=0.054)
Length = 596
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 141 AIKNTMPVGKHITIIP*DMRLINSLTSRVESNSESLCMKRIV 266
AI +P KH + D+RLI SLTS+V E L + R++
Sbjct: 240 AIARPLPKSKHAKTVENDVRLI-SLTSQVAKIMEGLTLSRML 280
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 29.5 bits (63), Expect = 4.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 167 SNRHSILYCSNIYRDCIRHYWRKDCPGS 84
S+ H+ +Y +++DC RH W CP S
Sbjct: 684 SSDHTHVYQRFLFKDCFRHPWPFYCPPS 711
>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
Length = 804
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 556 PAASFVSLLALPGPHRPSPFDSPRWSWATTSIVP 657
P A F LL PG RP F++ W+ A T ++P
Sbjct: 114 PTADFKPLL--PGDSRPVLFNAENWAVAKTDVMP 145
>SB_36940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/13 (76%), Positives = 13/13 (100%)
Frame = -2
Query: 94 VLGPHARYTEGIS 56
VLGPHARYT+G++
Sbjct: 5 VLGPHARYTDGVN 17
>SB_8819| Best HMM Match : I-set (HMM E-Value=0)
Length = 1789
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 705 GNPVSIINIFVSPDGKGDYTCGGPRPTGRIKRRWSMGAR 589
G+ SI + SP+ G Y C P+G+ + + +G +
Sbjct: 1284 GDTYSIRIVRTSPEDAGTYMCEATNPSGKASKNFDIGIK 1322
>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
Length = 1195
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 720 PRY-MGGNPVSIINIFVSPDGKGDYTCGGPRPTGR 619
P Y + GN +SI+N+ + +G+YTC GR
Sbjct: 684 PNYDIDGNKLSIVNVQNNASYEGNYTCTADSRAGR 718
>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1150
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 339 YKSNKTSNVISGALHLTCF*RIIRPVL 419
Y+ T + ISG LH +C+ RII VL
Sbjct: 523 YQGGYTRDAISGWLHASCYIRIIMRVL 549
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,133,686
Number of Sequences: 59808
Number of extensions: 692652
Number of successful extensions: 1789
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1785
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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