Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0688.Seq
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    27   2.9  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   8.8  

>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 257 VLGYIPVRSPLLRKSWLVSFPPLTNMLKFGAFVL 358
           +LGY P ++P  R+    ++  + N + FGA ++
Sbjct: 218 LLGYFPKKTPSYREITTPAYSKIDNYIWFGAIII 251


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 342 SGHSYCDVRGEILGSSQDXTSAKAFAKGVFINQERKLEVRRRLDT 476
           S   Y D R +I+    + T+  A A  +F+N  +   VRR L T
Sbjct: 17  SNSQYEDARSKIVNFGGEFTNDAAKADYIFVNYSQINRVRRELRT 61


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 127 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 234
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,485
Number of Sequences: 5004
Number of extensions: 48857
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)