Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0688.Seq
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0475 - 22571571-22572466,22572626-22572947                       29   5.2  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     28   9.2  
04_04_0842 + 28616729-28617078,28617166-28617359,28617416-286175...    28   9.2  

>01_05_0475 - 22571571-22572466,22572626-22572947
          Length = 405

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/37 (27%), Positives = 25/37 (67%)
 Frame = -3

Query: 451 NFRS*LMKTPLANAFADVSSCDDPRISPLTSQYECPE 341
           NF+    ++P+A  ++ +S+C+  ++S + S+ +CP+
Sbjct: 364 NFQVIRWQSPIAPYYSYISNCEIRKVSQVVSEEKCPK 400


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 103 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 195
           +L  RPSV  G A +T + P SRR   GV A
Sbjct: 97  TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127


>04_04_0842 +
           28616729-28617078,28617166-28617359,28617416-28617582,
           28617693-28617928,28618049-28618160
          Length = 352

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +3

Query: 12  RELVSRSYLALDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGTLYG 152
           R+ V RS+L     + PLR     NP L   P AATLR+YG    YG
Sbjct: 89  RDCVGRSFLRRLS-FQPLR----ENPVLG--PSAATLRKYGALDWYG 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,990,849
Number of Sequences: 37544
Number of extensions: 365433
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)