Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0688.Seq
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 8e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7) 40 0.002
SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5) 40 0.002
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.062
SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5) 33 0.19
SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8) 33 0.19
SB_45983| Best HMM Match : HLH (HMM E-Value=1.3) 31 0.76
SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9) 31 0.76
SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8) 31 0.76
SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9) 31 0.76
SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5) 31 0.76
SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30) 30 2.3
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 29 3.1
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.4
SB_5686| Best HMM Match : Mur_ligase_C (HMM E-Value=1.1e-08) 28 7.1
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
T+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
T+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
T+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
T+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 11 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
T+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 30 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 61
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
T+AKAFAK VFINQERKLE RRR DT LVLT+
Sbjct: 13 TTAKAFAKNVFINQERKLEDRRRSDTVLVLTI 44
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +3
Query: 399 TSAKAFAKGVFINQERKLEVRRRLDT 476
T+AKAFAK VFINQERKLE RRR DT
Sbjct: 3 TTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.8 bits (101), Expect = 8e-05
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = +3
Query: 408 KAFAKGVFINQERKLEVRRRLDTALVLTV 494
++ AK VFINQERKLE RRR DT LVLT+
Sbjct: 14 ESIAKNVFINQERKLEDRRRSDTVLVLTI 42
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/42 (54%), Positives = 28/42 (66%)
Frame = +3
Query: 369 GEILGSSQDXTSAKAFAKGVFINQERKLEVRRRLDTALVLTV 494
GEILG + ++ + FINQERKLE RRR DT LVLT+
Sbjct: 2 GEILGFRKT-NYCESICQECFINQERKLEDRRRSDTVLVLTI 42
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3
Query: 408 KAFAKGVFINQERKLEVRRRLDTALVLTV 494
++ + VFINQERKLE RRR DT LVLT+
Sbjct: 14 ESICQDVFINQERKLEDRRRSDTVLVLTI 42
>SB_45856| Best HMM Match : DUF755 (HMM E-Value=4.7)
Length = 187
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +2
Query: 23 LAVIFSLRWSLPPA*GCTLKQPDS----KERP 106
L IFS RWSLPP GC KQPDS +ERP
Sbjct: 103 LVPIFSFRWSLPPILGCIPKQPDSSKAHRERP 134
>SB_12256| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 156
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/32 (62%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Frame = +2
Query: 23 LAVIFSLRWSLPPA*GCTLKQPDS----KERP 106
L IFS RWSLPP GC KQPDS +ERP
Sbjct: 72 LVPIFSFRWSLPPILGCIPKQPDSSKAHRERP 103
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3
Query: 429 FINQERKLEVRRRLDTALVLTV 494
FINQERKLE RRR DT LVLT+
Sbjct: 21 FINQERKLEDRRRSDTVLVLTI 42
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +3
Query: 429 FINQERKLEVRRRLDTALVLTV 494
FINQERKLE RRR DT LVLT+
Sbjct: 21 FINQERKLEDRRRSDTVLVLTI 42
>SB_46955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 23 LAVIFSLRWSLPPA*GCTLKQPDSKERPSRR 115
+ ++ + RWSLPP GC KQPDS + +R
Sbjct: 28 IILLHTRRWSLPPILGCIPKQPDSSKAHRKR 58
>SB_45914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 9 ERELVSRSYLALDGVYHPLRAALSSNPTLRS-VPLAATLRRYGPGTLYGKTAPFKTNLDR 185
ER ALDG YHP AA +NPT R + RR G L + P +NLD
Sbjct: 48 ERHAPQAPRSALDGFYHPFWAAFPNNPTRRKHIVNGRDRRRRGCHPL-RRAVP--SNLDD 104
Query: 186 SRRDEKAEPPE 218
EK +P E
Sbjct: 105 LGSAEKGDPLE 115
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 9 ERELVSRSYLALDGVYHPLRAALSSNPTLR 98
ER ALDGVYHP AA +NPT R
Sbjct: 48 ERHAPQAPRSALDGVYHPFWAAFPNNPTRR 77
>SB_25877| Best HMM Match : TP1 (HMM E-Value=8.5)
Length = 139
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Frame = +2
Query: 44 RWSLPPA*GCTLKQPDS----KERP 106
RWSLPP GC KQPDS +ERP
Sbjct: 62 RWSLPPILGCIPKQPDSSKAHRERP 86
>SB_26769| Best HMM Match : Popeye (HMM E-Value=1.8)
Length = 411
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 9 ERELVSRSYLALDGVYHPLRAALSSNPTLR 98
ER ALDGVYHP AA +NPT R
Sbjct: 334 ERHAPQAPRSALDGVYHPFWAAFPNNPTRR 363
>SB_45983| Best HMM Match : HLH (HMM E-Value=1.3)
Length = 68
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +3
Query: 42 LDGVYHPLRAALSSNPTLR 98
LDGVYHP AA +NPT R
Sbjct: 2 LDGVYHPFWAAFPNNPTRR 20
>SB_41016| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 148
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 62 CLGMQPKMGGKLHLKLNIGTR 82
>SB_39882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 8 CLGMQPKMGGKLHLKLNIGTR 28
>SB_28599| Best HMM Match : MSSP (HMM E-Value=6.8)
Length = 148
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 62 CLGMQPKMGGKLHLKLNIGTR 82
>SB_10424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 36 CLGMQPKMGGKLHLKLNIGTR 56
>SB_52707| Best HMM Match : RPEL (HMM E-Value=8.9)
Length = 147
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 61 CLGMQPKMGGKLHLKLNIGTR 81
>SB_34424| Best HMM Match : RNase_U2 (HMM E-Value=7.5)
Length = 206
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 120 CLGMQPKMGGKLHLKLNIGTR 140
>SB_30254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 19 CLGMQPKMGGKLHLKLNIGTR 39
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 31.5 bits (68), Expect = 0.76
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -1
Query: 84 CLRVQP*AGGKLHLRLNMTAR 22
CL +QP GGKLHL+LN+ R
Sbjct: 725 CLGMQPKMGGKLHLKLNIGTR 745
>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
Length = 1246
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +3
Query: 6 RERELVSRSYLALDGVYHPLRAALSSNPTLRSVPLAATLR---RYGPGTLYGKTAPFKTN 176
RER L R +LD V LRAA S T R + + T+R R G G KTN
Sbjct: 164 RERLLRERPVPSLDKVVESLRAAEISR-THRQIRGSRTIRNNQRKGRGNNGNNGGQQKTN 222
Query: 177 LDRSRRDEKAEPP 215
++ R+ + PP
Sbjct: 223 GNKRRQTQDRRPP 235
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 61 RLGLHSQATRL*GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 234
RL H+ + L + P P T + + + T +G++++RKR P TT+P+
Sbjct: 162 RLNCHTNSVIL-SSRKRPAPITTTPITTTITNHRLNCHTNSGILSSRKRPAPITTTPI 218
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 388 DDPRISPLTSQYECPE 341
DDPR+SP + QY C E
Sbjct: 241 DDPRVSPTSQQYACGE 256
>SB_5686| Best HMM Match : Mur_ligase_C (HMM E-Value=1.1e-08)
Length = 435
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -1
Query: 417 QMLSLMXRLATIQEFHL*RRNTNAPNLSILVSGGKETNQDFLSSGERTGI 268
Q+L RLA Q L R+ NAP ++I S GK T ++ L+S R G+
Sbjct: 16 QLLVADTRLALGQLGALNRQAFNAPVVAITGSSGKTTVKEMLASILREGL 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,610,512
Number of Sequences: 59808
Number of extensions: 396815
Number of successful extensions: 981
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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