Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0687.Seq
(911 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 171 6e-43
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 171 6e-43
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 171 6e-43
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 1e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 9e-06
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 43 4e-04
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 39 0.004
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 39 0.004
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.006
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 37 0.023
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 37 0.023
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 37 0.023
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 6.1
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 171 bits (416), Expect = 6e-43
Identities = 79/119 (66%), Positives = 91/119 (76%)
Frame = -1
Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
PP + EI EVS +IKK P F SG++GDNMLE S+ MPWFKGW VERK
Sbjct: 126 PPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERK 185
Query: 431 EGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
EG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 186 EGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVV 244
Score = 146 bits (353), Expect = 3e-35
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A
Sbjct: 246 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEART 305
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
F AQVI++NHPGQISNGYTPVLDC
Sbjct: 306 FHAQVIIMNHPGQISNGYTPVLDC 329
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 171 bits (416), Expect = 6e-43
Identities = 79/119 (66%), Positives = 91/119 (76%)
Frame = -1
Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
PP + EI EVS +IKK P F SG++GDNMLE S+ MPWFKGW VERK
Sbjct: 160 PPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERK 219
Query: 431 EGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
EG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 220 EGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVV 278
Score = 146 bits (353), Expect = 3e-35
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A
Sbjct: 280 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEART 339
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
F AQVI++NHPGQISNGYTPVLDC
Sbjct: 340 FHAQVIIMNHPGQISNGYTPVLDC 363
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 171 bits (416), Expect = 6e-43
Identities = 79/119 (66%), Positives = 91/119 (76%)
Frame = -1
Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
PP + EI EVS +IKK P F SG++GDNMLE S+ MPWFKGW VERK
Sbjct: 160 PPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERK 219
Query: 431 EGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
EG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 220 EGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVV 278
Score = 146 bits (353), Expect = 3e-35
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A
Sbjct: 280 FAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEART 339
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
F AQVI++NHPGQISNGYTPVLDC
Sbjct: 340 FHAQVIIMNHPGQISNGYTPVLDC 363
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/74 (43%), Positives = 37/74 (50%)
Frame = -2
Query: 505 DGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLKLSMPSCHLPAPLTSPCVFPCKTYT 326
D TETTC C GSRDG + RK L E S +L PS H A LT VF + T
Sbjct: 178 DSTETTCLRSPRTCHGSRDGLLNARKETLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCT 237
Query: 325 KSVVLVPCPSAELK 284
+S L P S L+
Sbjct: 238 RSEELEPSQSDVLR 251
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 48.0 bits (109), Expect = 9e-06
Identities = 30/102 (29%), Positives = 54/102 (52%)
Frame = -1
Query: 584 EIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 405
EIK +S ++ + S +F SG+ G+N+++ ++ W+ DG CL
Sbjct: 330 EIKNNLSVFLTRQ-AGFSKPKFVPVSGFTGENLIK-RMELDWY------------DGPCL 375
Query: 404 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 279
+E +D+ + P P+D PLR+ + DV K+ V G++E+G
Sbjct: 376 LELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 48.0 bits (109), Expect = 9e-06
Identities = 30/102 (29%), Positives = 54/102 (52%)
Frame = -1
Query: 584 EIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 405
EIK +S ++ + S +F SG+ G+N+++ ++ W+ DG CL
Sbjct: 348 EIKNNLSVFLTRQ-AGFSKPKFVPVSGFTGENLIK-RMELDWY------------DGPCL 393
Query: 404 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 279
+E +D+ + P P+D PLR+ + DV K+ V G++E+G
Sbjct: 394 LELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKIESG 435
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 42.7 bits (96), Expect = 4e-04
Identities = 26/91 (28%), Positives = 43/91 (47%)
Frame = -3
Query: 279 CVETRYHCFFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSK 100
CV+ P +V + + V GDN+ F +K + EL+ G++ S
Sbjct: 363 CVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFII-CSP 421
Query: 99 NNPPKGAADFTAQVIVLNHPGQISNGYTPVL 7
++ K F A+V+VL H I++GY+ VL
Sbjct: 422 DSLAKTGRVFDAEVLVLEHRSIIASGYSCVL 452
Score = 34.7 bits (76), Expect = 0.093
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -1
Query: 416 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 264
G C IE +D +LP R + P+R + + Y +GTV +G++E+G ++ G
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKG 367
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -1
Query: 464 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 294
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 293 RVETGVLKPG 264
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -1
Query: 464 PWFKGWQVERKEGKADGKC---LIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVG 294
P +G + EG+ D C LI+ALD++ P R +P+ I G GTV VG
Sbjct: 201 PVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
Query: 293 RVETGVLKPG 264
+E GVLK G
Sbjct: 260 TLERGVLKKG 269
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = -3
Query: 225 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 46
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 45 HPGQISNGYTPVL 7
HP I Y +L
Sbjct: 479 HPTTIKPNYQAML 491
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1
Query: 428 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 264
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 281
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 237 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 115
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1
Query: 428 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 264
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 237 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 115
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 36.7 bits (81), Expect = 0.023
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1
Query: 428 GKADGKCLIEALDA--ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 264
G+ K L+E LD ++P + ++P+ + VY I G GTV G++E G+LK G
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRG 282
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 237 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 115
+ + + +E + + +A PGD +G ++ + K++RRG V
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 225 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 46
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 45 H 43
H
Sbjct: 509 H 509
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,223,241
Number of Sequences: 27780
Number of extensions: 476405
Number of successful extensions: 1238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -