Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0687.Seq
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   197   1e-52
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   197   1e-52
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   189   3e-50
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   153   2e-39
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   133   2e-33
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.9  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  197 bits (480), Expect = 1e-52
 Identities = 92/119 (77%), Positives = 98/119 (82%)
 Frame = -1

Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
           PP  +   +EIKKEVSSYIKK    P+   F   SGWHGDNMLE S+KMPWFKGW VERK
Sbjct: 103 PPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 162

Query: 431 EGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
           EGK +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V
Sbjct: 163 EGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 221



 Score =  107 bits (258), Expect = 1e-25
 Identities = 50/52 (96%), Positives = 51/52 (98%)
 Frame = -3

Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 97
           FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN
Sbjct: 223 FAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  197 bits (480), Expect = 1e-52
 Identities = 92/119 (77%), Positives = 98/119 (82%)
 Frame = -1

Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
           PP  +   +EIKKEVSSYIKK    P+   F   SGWHGDNMLE S+KMPWFKGW VERK
Sbjct: 160 PPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 219

Query: 431 EGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
           EGK +GKCLIEALDAILPP RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V
Sbjct: 220 EGKVEGKCLIEALDAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 278



 Score =  178 bits (433), Expect = 7e-47
 Identities = 82/84 (97%), Positives = 83/84 (98%)
 Frame = -3

Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
           FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD
Sbjct: 280 FAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 339

Query: 72  FTAQVIVLNHPGQISNGYTPVLDC 1
           FTAQVIVLNHPGQISNGYTPVLDC
Sbjct: 340 FTAQVIVLNHPGQISNGYTPVLDC 363


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  189 bits (460), Expect = 3e-50
 Identities = 88/119 (73%), Positives = 97/119 (81%)
 Frame = -1

Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
           PP  +   +EIKKEVSSYIKK     +   F   SGWHGDNMLEPS K PW+KGW+VERK
Sbjct: 160 PPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERK 219

Query: 431 EGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
           +G ADGK LIEALDAILPP+RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V
Sbjct: 220 DGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLV 278



 Score =  169 bits (412), Expect = 2e-44
 Identities = 77/84 (91%), Positives = 81/84 (96%)
 Frame = -3

Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
           FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAAD
Sbjct: 280 FAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAAD 339

Query: 72  FTAQVIVLNHPGQISNGYTPVLDC 1
           FTAQVIVLNHPGQISNGYTPVLDC
Sbjct: 340 FTAQVIVLNHPGQISNGYTPVLDC 363


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  153 bits (372), Expect = 2e-39
 Identities = 69/74 (93%), Positives = 72/74 (97%)
 Frame = -3

Query: 222 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 43
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 42  PGQISNGYTPVLDC 1
           PGQISNGYTPVLDC
Sbjct: 61  PGQISNGYTPVLDC 74


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  133 bits (321), Expect = 2e-33
 Identities = 61/85 (71%), Positives = 66/85 (77%)
 Frame = -1

Query: 611 PPLED*FSQEIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERK 432
           PP  +   +EIKKEVSSYIKK    P+   F   SGWHGDNMLE S+KMPWFKGW VERK
Sbjct: 87  PPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 146

Query: 431 EGKADGKCLIEALDAILPPARPTDK 357
           EGK +GKCLIEALDAILPP RPTDK
Sbjct: 147 EGKVEGKCLIEALDAILPPTRPTDK 171


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 144 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 37
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,780
Number of Sequences: 438
Number of extensions: 5759
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)