Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0687.Seq
(911 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 148 6e-36
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 148 6e-36
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 148 6e-36
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 148 6e-36
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 54 2e-07
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 48 1e-05
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 44 1e-04
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 40 0.002
At1g35550.1 68414.m04414 elongation factor Tu C-terminal domain-... 37 0.016
At2g31060.1 68415.m03790 elongation factor family protein contai... 32 0.61
At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)... 31 1.4
At2g39560.1 68415.m04853 expressed protein 29 5.7
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 29 5.7
At1g09150.1 68414.m01020 pseudouridine synthase and archaeosine ... 29 5.7
At5g19490.1 68418.m02322 repressor protein-related similar to re... 28 9.9
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 28 9.9
At2g41700.1 68415.m05151 ABC transporter family protein similar ... 28 9.9
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 28 9.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 148 bits (358), Expect = 6e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAAN 327
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
FT+QVI++NHPGQI NGY PVLDC
Sbjct: 328 FTSQVIIMNHPGQIGNGYAPVLDC 351
Score = 123 bits (296), Expect = 2e-28
Identities = 65/110 (59%), Positives = 75/110 (68%)
Frame = -1
Query: 584 EIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 405
EI KEVSSY+KK P F SG+ GDNM+E ST + W+KG L
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTL 216
Query: 404 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 217 LEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVV 266
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 148 bits (358), Expect = 6e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAAN 327
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
FT+QVI++NHPGQI NGY PVLDC
Sbjct: 328 FTSQVIIMNHPGQIGNGYAPVLDC 351
Score = 123 bits (296), Expect = 2e-28
Identities = 65/110 (59%), Positives = 75/110 (68%)
Frame = -1
Query: 584 EIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 405
EI KEVSSY+KK P F SG+ GDNM+E ST + W+KG L
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTL 216
Query: 404 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 217 LEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVV 266
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 148 bits (358), Expect = 6e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAAN 327
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
FT+QVI++NHPGQI NGY PVLDC
Sbjct: 328 FTSQVIIMNHPGQIGNGYAPVLDC 351
Score = 123 bits (296), Expect = 2e-28
Identities = 65/110 (59%), Positives = 75/110 (68%)
Frame = -1
Query: 584 EIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 405
EI KEVSSY+KK P F SG+ GDNM+E ST + W+KG L
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTL 216
Query: 404 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 217 LEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVV 266
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 148 bits (358), Expect = 6e-36
Identities = 64/84 (76%), Positives = 77/84 (91%)
Frame = -3
Query: 252 FAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAAD 73
FAP +TTEVKSVEMHHE+L EA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P KGAA+
Sbjct: 268 FAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAAN 327
Query: 72 FTAQVIVLNHPGQISNGYTPVLDC 1
FT+QVI++NHPGQI NGY PVLDC
Sbjct: 328 FTSQVIIMNHPGQIGNGYAPVLDC 351
Score = 123 bits (296), Expect = 2e-28
Identities = 65/110 (59%), Positives = 75/110 (68%)
Frame = -1
Query: 584 EIKKEVSSYIKKNWLQPSCCRFRAHSGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 405
EI KEVSSY+KK P F SG+ GDNM+E ST + W+KG L
Sbjct: 169 EIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKG------------PTL 216
Query: 404 IEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
+EALD I P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V
Sbjct: 217 LEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVV 266
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = -1
Query: 407 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 264
L++A+D +P P R DKP +P++DV+ I G GTV GR+E GV+K G
Sbjct: 249 LMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVG 297
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -3
Query: 237 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 58
+ + V VEM + L GDNVG ++ + ++++RG V +K K F A++
Sbjct: 312 LKSTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIQRGMVI--AKPGSCKTYKKFEAEI 369
Query: 57 IVL 49
VL
Sbjct: 370 YVL 372
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = -1
Query: 407 LIEALDAILP-PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIV 255
L++A+D +P P R T+ P L ++DV+ I G GTV GRVE G +K G V
Sbjct: 269 LMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKVGETV 320
Score = 34.7 bits (76), Expect = 0.086
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -3
Query: 225 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYV 115
V VEM + L EA+ GDNVG ++ + +++RG V
Sbjct: 333 VTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMV 369
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = -1
Query: 416 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTIV 255
G CL++A+D++ P R KPL +P+ D + G V G++E G ++PG+ V
Sbjct: 447 GPCLLDAVDSVKSPDRDVSKPLLMPICDAVRSTSQGQVSACGKLEAGAVRPGSKV 501
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = -1
Query: 416 GKCLIEALDAILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 264
G E LD+I P R + P R+P+ D +K +GTV +G+VE+G ++ G
Sbjct: 310 GPSFFEVLDSIEIPPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSIREG 358
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -3
Query: 246 PANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFT 67
P +V ++ + ++ A PG+N+ + + +++ G+V S NP +F
Sbjct: 365 PNKEQVKVVAIYCDEDKVKRAGPGENLRVRITGIEDEDILSGFVL-SSIVNPVPAVTEFV 423
Query: 66 AQVIVL 49
AQ+ +L
Sbjct: 424 AQLQIL 429
>At1g35550.1 68414.m04414 elongation factor Tu C-terminal
domain-containing protein similar to SP|P13905
Elongation factor 1-alpha (EF-1-alpha) {Arabidopsis
thaliana}; contains Pfam profile PF03143: Elongation
factor Tu C-terminal domain
Length = 104
Score = 37.1 bits (82), Expect = 0.016
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -3
Query: 51 LNHPGQISNGYTPVLDC 1
+NH GQI NGYTPVLDC
Sbjct: 1 MNHLGQIKNGYTPVLDC 17
>At2g31060.1 68415.m03790 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain, PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 527
Score = 31.9 bits (69), Expect = 0.61
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -1
Query: 455 KGW--QVERKEGKADGKCLIEALDAIL----PPARPTDKPLRLPLQDVYKIGGIGTVPVG 294
+GW K+ D K + + LDA++ PP D+P + + + K +G + G
Sbjct: 82 EGWASSTYTKDPPVDAKNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTG 141
Query: 293 RVETGVLKPG 264
RV +GV++ G
Sbjct: 142 RVTSGVVRVG 151
>At2g46830.1 68415.m05843 myb-related transcription factor (CCA1)
identical to myb-related transcription factor (CCA1)
GI:4090569 from [Arabidopsis thaliana]
Length = 608
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 434 KEGKADGKCLIEALDAILPPARPTDKP 354
KE +A G + +ALD +PP RP KP
Sbjct: 74 KEAEAKGVAMGQALDIAIPPPRPKRKP 100
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 259 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLS 363
+ P + TP ++ T P+ P+L SC GR+ +S
Sbjct: 144 ITPPYLTPRASPSLFTPPLTPLLMESCNGRKEEIS 178
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 485 LEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 387
++ T W KG++V EGK CL EA++A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At1g09150.1 68414.m01020 pseudouridine synthase and archaeosine
transglycosylase (PUA) domain-containing protein similar
to MCT-1 (putative oncogene) [Homo sapiens] GI:6177738;
contains Pfam profile PF01472: PUA domain
Length = 181
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 319 VVLVPCPSAELKLVC*NQVPLFLCPRQHHY 230
+++V CP+ L LV N VPLF C R Y
Sbjct: 49 LIVVKCPN-HLTLVVVNNVPLFFCIRDGPY 77
>At5g19490.1 68418.m02322 repressor protein-related similar to
repressor protein [Oryza sativa] GI:18481624
Length = 236
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 304 TVPIPPILYTSCRGRRRGLSVGRAGGRMASRASMR 408
T + + +TSC RRG GR+ GR S S++
Sbjct: 92 TTQMHEVKHTSCGRGRRGRGRGRSSGRTGSGLSLK 126
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 606 PRRLVLSGNQEGSILIHQEELATTQLLSLSCPFWMARRQHVGAFNQ 469
P +V+ + +GS +++ +ELAT ++ +L + QH+G Q
Sbjct: 528 PDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLGMVMQ 573
>At2g41700.1 68415.m05151 ABC transporter family protein similar to
ATP-binding cassette transporter ABCA1 GI:18031705 from
[Arabidopsis thaliana]
Length = 1822
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 614 GPPLED*FSQEIKKEVSSYIKKNWLQP 534
G P+ S I KEV+ YI+ W+QP
Sbjct: 961 GGPIPFDLSVPIAKEVAQYIEGGWIQP 987
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = -3
Query: 285 NWCVETRYHCFFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNV 145
NW ET + F P N TT +V + E +QE VP G NV+ V
Sbjct: 302 NWVNETGEYLSF-PQNQTTFNGNVLQYLEFIQEMVPDIEWGKNVRIV 347
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,406,078
Number of Sequences: 28952
Number of extensions: 454345
Number of successful extensions: 1269
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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