Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0686.Seq
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    29   0.77 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    27   4.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   7.2  

>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 660 LRLYXRA*GVWADVNRNNVIYFRKFNVVIYGVNI 559
           L+LY  A G+W++ ++ + +  + +  V YGV+I
Sbjct: 119 LQLYRIAHGLWSEGDKTSAVLVQNWTAVAYGVDI 152


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
 Frame = -3

Query: 450 SKVQYSYNGCPTLQTETHYXFTAEIGRVVVPTHVYSQEIQTPLKPSSA----RPISTLRK 283
           S VQ   N   ++ T T Y F+AE+G +V P   +    Q+ L  +S      P+  L  
Sbjct: 182 SIVQNLTNKDSSVDTAT-YDFSAEVGNIVTPASKFLDYDQSYLVNASVSGDPTPVKVLNT 240

Query: 282 VQXSYSTALNGAK--NMVNQNIHLIHTYXKMHIYIYIVQDDITDLK 151
                   LN +   + + +N+    T     +Y   ++  +  L+
Sbjct: 241 TSPKSENPLNQSSFLSFLGENLKPKFTSRSSSVYASPIKSSLNSLE 286


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = -3

Query: 363 VPTHVYSQEIQTPLKPSSARPISTLRKVQXSYSTALNGAKNMVNQNIHL 217
           +PT + SQ + +P  P++   +ST R    S ST+    +N+V  N ++
Sbjct: 183 LPTVLNSQALSSPPVPTTPDEVSTNR---LSSSTSSMNCRNLVPDNFNI 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,864
Number of Sequences: 5004
Number of extensions: 54441
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)