Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0686.Seq
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    29   3.9  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    29   3.9  
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st...    29   3.9  
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st...    29   3.9  
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    28   6.8  

>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 92  CCHNLHFNMSMF 127
           CCH+ HFNM MF
Sbjct: 68  CCHSCHFNMDMF 79


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 480  STVHPP*DISSKVQ--YSYNGCPTLQTE-THYXFTAEIGRVVVPTHVYSQEIQTPLKPSS 310
            +T+  P  IS K+    S  G  +L+ E T    T E    V  THVY   + TPL    
Sbjct: 836  TTLGLPLTISGKIPTVISAEGQFSLELEGTELRLTVEARPSVAATHVYEMRMFTPLFEQG 895

Query: 309  ARPISTLRKVQXSYSTALNGAK 244
             + + ++R        A+ G K
Sbjct: 896  VKSVQSVRAYTPIKIQAVAGMK 917


>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 2, isoform
            b protein.
          Length = 1558

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 480  STVHPP*DISSKVQ--YSYNGCPTLQTE-THYXFTAEIGRVVVPTHVYSQEIQTPLKPSS 310
            +T+  P  IS K+    S  G  +L+ E T    T E    V  THVY   + TPL    
Sbjct: 836  TTLGLPLTISGKIPTVISAEGQFSLELEGTELRLTVEARPSVAATHVYEMRMFTPLFEQG 895

Query: 309  ARPISTLRKVQXSYSTALNGAK 244
             + + ++R        A+ G K
Sbjct: 896  VKSVQSVRAYTPIKIQAVAGMK 917


>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 2, isoform
            a protein.
          Length = 1613

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = -3

Query: 480  STVHPP*DISSKVQ--YSYNGCPTLQTE-THYXFTAEIGRVVVPTHVYSQEIQTPLKPSS 310
            +T+  P  IS K+    S  G  +L+ E T    T E    V  THVY   + TPL    
Sbjct: 836  TTLGLPLTISGKIPTVISAEGQFSLELEGTELRLTVEARPSVAATHVYEMRMFTPLFEQG 895

Query: 309  ARPISTLRKVQXSYSTALNGAK 244
             + + ++R        A+ G K
Sbjct: 896  VKSVQSVRAYTPIKIQAVAGMK 917


>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -3

Query: 405  ETHYXFTAEIGRVVVPTHVYSQEIQTPLKPSSARPISTLRKVQXSYSTALNGAK 244
            ET    T E    V  THVY   + TPL     + + ++R        A+ G K
Sbjct: 866  ETELRLTVEARPSVAATHVYEMRMFTPLFEQGVKSVQSVRAYTPIKIQAVVGMK 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,448
Number of Sequences: 27780
Number of extensions: 306595
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)