Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0673.Seq
         (268 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   0.75 
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   0.75 
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   1.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   5.3  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    20   5.3  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    20   5.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   7.0  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    19   7.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   7.0  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    19   7.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   7.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   7.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   7.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   9.3  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 0.75
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 45  SSLKNHYFHCFITYSVGRK 101
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 0.75
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 120 YYRPRTASAQPSK 82
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 258 DNVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARR 121
           DN+P  +++P  S  +PD     + D +  H+T   A       RR
Sbjct: 1   DNLPSSASNPAVSERDPDEDN--SEDSKDPHLTDQQASGHKKRKRR 44


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 98  PPNRVSNETMKVVVFQRRSRE 36
           PPN  +N    VVV    +RE
Sbjct: 226 PPNTENNCAQPVVVIMSPTRE 246


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 265 FF*QCTAPVKLPAWQC 218
           +F  CTA  ++  W C
Sbjct: 225 WFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 265 FF*QCTAPVKLPAWQC 218
           +F  CTA  ++  W C
Sbjct: 225 WFINCTAKGRVAVWMC 240


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 210  PDHAGVLNGDERFRHVTTLHAWNETPCARR 121
            P +A   + D  F    T+H W E    RR
Sbjct: 2030 PMYAHPEDADATFNTNFTIHYWIEKGADRR 2059


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 40  AKRSPTYATPL 8
           A+ SP YA+PL
Sbjct: 212 AQNSPLYASPL 222


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 237 NSPPGSVLEPDHAGVLNGDERFRHVT 160
           N  PG +  P+H  V       R+ T
Sbjct: 310 NMYPGEMYNPEHTTVNEAQPYVRNTT 335


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 26  GRSFRAIVAEKPLLSLFHYLL 88
           GRSF   V    +  +FH +L
Sbjct: 149 GRSFTYYVCNTTIFLIFHSVL 169


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 258  DNVPPQSNSPPGSVL 214
            +N+P  + + PG++L
Sbjct: 1023 NNIPTNAGTTPGAIL 1037


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 237 NSPPGSVLEPDHAGVLNGDERFRHVT 160
           N  PG +  P+H  V       R+ T
Sbjct: 258 NMYPGEMYNPEHTTVNEAQPYVRNTT 283


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 19.4 bits (38), Expect = 7.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = -2

Query: 237 NSPPGSVLEPDHAGVLNGDERFRHVT 160
           N  PG +  P+H  V       R+ T
Sbjct: 441 NMYPGEMYNPEHTTVNEAQPYVRNTT 466


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.0 bits (37), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 183 DERFRHVTTL 154
           D RFRH+T +
Sbjct: 352 DVRFRHITEI 361


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,085
Number of Sequences: 336
Number of extensions: 1333
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  4378513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)