Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0673.Seq
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   2.4  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    24   3.1  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    24   4.1  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    24   4.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   5.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   7.2  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    23   7.2  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    23   7.2  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    23   7.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    23   9.6  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    23   9.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   9.6  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 231 PPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 139
           P   ++E D A          H+T LH WNE
Sbjct: 876 PKDKIMEADKARANFTQPGGDHLTLLHIWNE 906


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 241 VKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 110
           + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 154 IPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 172 PPRHHSARLERNTVRPPILSTAHRFRPT 89
           PP ++  ++ERNT   PI     RF  T
Sbjct: 492 PPSYNKPKVERNTTADPIF-VGKRFYST 518


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 172 PPRHHSARLERNTVRPPILSTAHRFRPT 89
           PP ++  ++ERNT   PI     RF  T
Sbjct: 492 PPSYNKPKVERNTTADPIF-VGKRFYST 518


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 13/53 (24%), Positives = 21/53 (39%)
 Frame = +3

Query: 36   FARSSLKNHYFHCFITYSVGRKRCAVDNIGGRTVFRSKRAEW*RGGNARRRLK 194
            +  + ++ HY   F  YS+  K    D  G      + R EW +    R  +K
Sbjct: 1954 YGHAEVQAHYGQDFREYSILTKSFEKDEDGNVKGINTVRIEWTKNSKGRWIMK 2006


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 233 PRLAVSSNRITREF*TATSVSATSPLCTLGTKH 135
           PRL  S NRI+  F ++T  S    + ++ TK+
Sbjct: 130 PRLVWSQNRISDSFLSSTISSDACFIASIETKN 162


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 192  LNGDERFRHVTTLHAWNETPCARRYYRPRTASAQPSK**NNESSG 58
            +N D+ F H        ETP    Y+  R A A  S   ++ +SG
Sbjct: 935  INWDDIFSHEAPFIPAPETPLDTAYFDSRGAGAAESNMSSSVNSG 979


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 14  CSISGRSFRAIVAEKPLL 67
           CS+ G SFR +V  + LL
Sbjct: 274 CSLHGASFRTLVGVRTLL 291


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 30  DRFARSSLKNHYFHCFIT 83
           D+FA S L+   F CFI+
Sbjct: 355 DQFAHSFLRTPMFDCFIS 372


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 257 TMYRPSQTPRLAVSSNRITREF*TAT 180
           T   P Q P L+VS NR+ +   T T
Sbjct: 94  TSVPPEQDPSLSVSFNRLPKSASTKT 119


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 176 VSATSPLCTLGTKHRAPADIIDRAPLPP 93
           ++   P  +   + R+  D + R PLPP
Sbjct: 164 ITVAEPRRSFAREERSTGDWVRRGPLPP 191


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 223  QCPRTGSRGSFKRRRAFPPRHHSARLERNTVRP 125
            + P T ++ S  +   F P+  S + +   VRP
Sbjct: 1445 EAPNTSTKSSPAKNELFVPKRSSVKSDLAKVRP 1477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,176,934
Number of Sequences: 5004
Number of extensions: 21855
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)