Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0673.Seq
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.072
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 0.39
06_03_1448 + 30235336-30236763 29 0.67
06_03_1443 + 30182018-30183445 29 0.67
06_03_1440 + 30166515-30167942 29 0.67
06_03_1437 + 30151030-30152457 29 0.67
06_03_1429 + 30100834-30102261 29 0.67
06_03_1425 + 30084383-30085810 29 0.67
06_03_1420 - 30053713-30055140 29 0.67
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 0.67
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 1.2
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 1.6
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 27 2.1
12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768 27 2.7
03_02_0763 - 10977793-10978092,10978896-10978996,10979580-109796... 27 2.7
05_05_0175 + 22966151-22967614 26 3.6
02_05_0597 + 30245455-30245767,30246693-30246760,30246851-302469... 26 3.6
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 26 4.8
08_02_1411 + 26880766-26880911,26881000-26881097,26881207-268812... 26 4.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 26 4.8
01_05_0359 + 21350580-21350829,21350990-21351064,21351156-213512... 26 4.8
11_06_0369 - 22760383-22760440,22761410-22761497,22761582-227616... 25 6.3
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 25 6.3
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 25 6.3
01_05_0179 + 18973795-18973992,18974087-18974276,18974374-189745... 25 6.3
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 25 8.3
04_04_0477 + 25517060-25517152,25517263-25517382,25518203-255185... 25 8.3
03_02_0411 + 8217324-8218172 25 8.3
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.072
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -1
Query: 229 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 107
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 258 DNVPPQSNSPPGSVLEPDHAGVLNGDE 178
D P +NS P +V +PD +LNGDE
Sbjct: 736 DTWPTSNNSVPQNVDQPDSKKMLNGDE 762
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 234 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 97
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 0.67
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 162 TTLHAWNETPCARRYY 115
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 248
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 244 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 122
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 93 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 248
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGA 92
>12_01_0402 - 3179365-3180343,3180907-3182530,3183357-3183768
Length = 1004
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 240 SNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASAQPS 85
S +PP + + VL D++ L+A E+P + P TAS PS
Sbjct: 405 SENPPTFAVLSSRSDVLPEDQKEHPAANLNAQIESPEDHKEVDPTTASGIPS 456
>03_02_0763 -
10977793-10978092,10978896-10978996,10979580-10979648,
10979787-10979857,10979946-10980100,10980348-10980477,
10980946-10981013,10981335-10981592
Length = 383
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 237 NSPPGSVLEPDHAGVL--NGDERFRHVTTLHAWN 142
N+ PG + +H NG +RF H+ L++WN
Sbjct: 182 NAIPGRLYGGNHIDNADGNGGDRFGHLVDLYSWN 215
>05_05_0175 + 22966151-22967614
Length = 487
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 172 PPRHHSARLERNTVRPP 122
PPRHH + L+R PP
Sbjct: 281 PPRHHVSTLQRKESEPP 297
>02_05_0597 +
30245455-30245767,30246693-30246760,30246851-30246939,
30247047-30247212,30247296-30247585,30247692-30247896,
30248013-30248170,30248352-30248595
Length = 510
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = -3
Query: 209 RITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 84
R+ + + + + + T+ P ++++APLPP R+
Sbjct: 65 RVLKGWPSCRTAQEAASAALAATRLPMPVPVVEKAPLPPKRI 106
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 39 ARSSLKNHYFHCFITYSVGRKRCAVDNI 122
+R SLK H CF YS+ RK C N+
Sbjct: 121 SRLSLK-HLLRCFDFYSIDRKFCNGTNL 147
>08_02_1411 +
26880766-26880911,26881000-26881097,26881207-26881274,
26881595-26881683,26881786-26882007,26883056-26883790,
26883880-26884078,26884319-26884404,26886175-26886536,
26887290-26887921
Length = 878
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 202 RGSFKRRRAFPPRHHSARLERNTVRPPILSTAH 104
RG KR R+ PPRH + P + AH
Sbjct: 579 RGRHKRARSSPPRHDDEPPPPPPLSPAVTGGAH 611
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 170 RKRSSPFKTPA*SGSRTLPGGEFDWG 247
+KR P K PA S S+ LPG + + G
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELG 364
>01_05_0359 +
21350580-21350829,21350990-21351064,21351156-21351236,
21352633-21352830,21352930-21353019,21353096-21353253,
21353350-21353472,21354989-21355096,21355530-21355826
Length = 459
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -3
Query: 167 TSPLCTLGTKHRAPADIIDRAPLPPNR 87
T P GTK R PADI A LPPN+
Sbjct: 15 TIPPELAGTKSRCPADI--PANLPPNQ 39
>11_06_0369 -
22760383-22760440,22761410-22761497,22761582-22761649,
22761742-22761858,22761964-22762084,22762172-22762247,
22762336-22762435,22762524-22762615,22763514-22763664,
22764698-22764792,22764900-22765193
Length = 419
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 221 VSSNRITREF*TATSVSATSPLCTL 147
+ SN+ITRE A S A SP CTL
Sbjct: 286 IGSNKITRE---AISAFAVSPDCTL 307
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 240 SNSPPGSVLEPDHAGVLNGD 181
S+SPPG P+H G G+
Sbjct: 15 SSSPPGDARGPEHGGTPRGE 34
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = -2
Query: 246 PQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWN-ETPC 130
PQ +S PG+V PD G D R + L N ET C
Sbjct: 414 PQQSSTPGAVFSPDMIGEAVAD---RTIELLRLTNSETQC 450
>01_05_0179 +
18973795-18973992,18974087-18974276,18974374-18974504,
18974948-18975053,18975661-18975727,18976632-18976698,
18977858-18977947
Length = 282
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 131 HGVSFQACRVVTWRKRSSPFK 193
HG S QAC V +K+SS FK
Sbjct: 136 HGRSKQACSVDAQKKKSSLFK 156
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 217 PRTGSRGSFKRRRAFPPRHHSA 152
P S G ++RR P RHH A
Sbjct: 17 PPASSGGRYRRRSPSPRRHHRA 38
>04_04_0477 +
25517060-25517152,25517263-25517382,25518203-25518506,
25518944-25519305,25519401-25519575,25520510-25520574,
25520725-25520790,25521275-25521350,25521813-25521922
Length = 456
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 102 RCAVDNIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRG 218
R + + GR + +R + RGG ARR P D RG
Sbjct: 395 RASPIELNGRLIHVEERRQIYRGGGARRGRGRPADFSRG 433
>03_02_0411 + 8217324-8218172
Length = 282
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 211 TGSRGSFKRRR--AFPPRHHSARLERNTVRPPILSTAHR 101
+GSRGS++RRR P +A R T + P+ A R
Sbjct: 135 SGSRGSWRRRRRLTMPVEDLAAARRRATAKWPLAVAAVR 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,455,548
Number of Sequences: 37544
Number of extensions: 180749
Number of successful extensions: 631
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -