Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0673.Seq
         (268 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical ...    28   0.79 
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    26   4.2  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    26   4.2  
AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical ...    26   4.2  
AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical ...    26   4.2  
Z81044-1|CAB02810.1|  223|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z93377-5|CAB07579.1|  195|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z66521-5|CAA91399.1|  312|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U64834-1|AAL06027.1|  192|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z73908-3|CAC42305.1|  184|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    25   9.7  
AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    25   9.7  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AF078788-1|AAC26965.2|  629|Caenorhabditis elegans Hypothetical
           protein ZC190.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/45 (28%), Positives = 28/45 (62%)
 Frame = -3

Query: 149 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCY 15
           +GT+ +   DIID   +P N +S++ +  +++  R  ET++H+ +
Sbjct: 287 VGTR-KTSTDIIDGFNVPSNMISDDNLPALIY--RVIETLNHMIF 328


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 188 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 72
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 661


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 188 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 72
           T+ +   TSP  T+GT   APA++      P N  S+ T
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTT 717


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -1

Query: 217 PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHR 101
           PR  +R S  RRR  PP     R +R   R P+     R
Sbjct: 227 PRRDTRRSPPRRRGSPPARGGDRRDRREDRRPVRDEKER 265


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -2

Query: 261 FDNVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASAQP 88
           + + PP SNSPP S+        +  DE  RH  T      +        P+T  +QP
Sbjct: 57  YPSPPPPSNSPPESMASLQAESPIE-DEDARHEMTSTEGTSSTGTGSPQEPKTWISQP 113


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -2

Query: 261 FDNVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARRYYRPRTASAQP 88
           + + PP SNSPP S+        +  DE  RH  T      +        P+T  +QP
Sbjct: 57  YPSPPPPSNSPPESMASLQAESPIE-DEDARHEMTSTEGTSSTGTGSPQEPKTWISQP 113


>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 240 SNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCAR 124
           +++P  S +E     + +  ERFR   TL   N+T  AR
Sbjct: 49  NDTPVASEIEQVEKELAHSSERFRKPKTLSVTNDTESAR 87


>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 235 LPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTA 107
           LP+    +T S  +  +R++ P  H +A + +   +PP   TA
Sbjct: 229 LPSSSASKTSSSPAGLKRKSAPSEHPNAPIRKKPQQPPKPQTA 271


>AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical
           protein Y67H2A.7 protein.
          Length = 692

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 99  SAQPSK**NNESSGFSATIARNDLPLMLHL 10
           SAQ S+  NN  +   +TIA +DL  ++HL
Sbjct: 303 SAQCSQQDNNNGNNEISTIAEHDLGFLMHL 332


>AF047653-2|AAC04459.1|  388|Caenorhabditis elegans Hypothetical
           protein W02F12.3 protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 258 DNVPPQSNSPPGSVLEPDHAG 196
           D+VP  S +PPGS   P  AG
Sbjct: 47  DDVPSTSGAPPGSSSAPTPAG 67


>Z81044-1|CAB02810.1|  223|Caenorhabditis elegans Hypothetical
           protein C30H6.1 protein.
          Length = 223

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 252 VPPQSNSPPGSVLEPDHAGVLNGD 181
           +PP SNS  GS+ +   AG++  D
Sbjct: 69  IPPTSNSKSGSLADSGQAGLVLAD 92


>Z93377-5|CAB07579.1|  195|Caenorhabditis elegans Hypothetical
           protein F13A7.9 protein.
          Length = 195

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 134 RAPADIIDRAPLPPNRVSNETMKVVV 57
           RAP D    AP+P  +V+ + + +V+
Sbjct: 53  RAPEDSAPMAPIPVEKVTGDILNMVI 78


>Z66521-5|CAA91399.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.9 protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +3

Query: 168 GGNARRRLKLPRDPVRGHCQAGSLTGAV-HC 257
           GG       LP   V  H  AG+L GAV HC
Sbjct: 3   GGGEDEYESLPTHSVPVHLTAGALAGAVEHC 33


>U64834-1|AAL06027.1|  192|Caenorhabditis elegans Hypothetical
           protein F54D11.4 protein.
          Length = 192

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = -3

Query: 218 SSNRITREF*TATSVSATSPLCTLGTKHR--APADI 117
           +S+RITR    ATSV++ +P  TLG K +   PA I
Sbjct: 10  TSSRITRRSQAATSVTSQTPK-TLGRKKQTTTPAKI 44


>Z73908-3|CAC42305.1|  184|Caenorhabditis elegans Hypothetical
           protein F53B2.8 protein.
          Length = 184

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 90  VGRKRCAVDNIGGRTVFRSK 149
           VG+KR   +N+GG+   RSK
Sbjct: 41  VGKKRAPKNNMGGKKRLRSK 60


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical protein
            F26C11.3 protein.
          Length = 1317

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 146  QACRVVTWRKRSSPFKTPA*SGSRTLPGGE 235
            Q C+  +  +  + F  P    +RTLP GE
Sbjct: 1063 QGCKATSTTQTPTTFNWPTGGTTRTLPSGE 1092


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 30  DRFARSSLKNHYFHCFITYSVGRKRCAVDNIGGRTVF 140
           DR  R SLKN     F+TY+      +  NI  R+ F
Sbjct: 70  DRATRLSLKNQQLKEFLTYTPVILNASTTNIVTRSKF 106


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 267 FFFDNVPPQSNSPPGSVLEP 208
           FFFD  PP     P  +LEP
Sbjct: 148 FFFDQPPPTPIPTPVPILEP 167


>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -1

Query: 250 TAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVR 128
           ++P    AW   R G  G F + R   P    AR  +  VR
Sbjct: 55  SSPTPQSAWAPNRQGFGGQFSKWRTSTPMTTPARYPQQAVR 95


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 250 TAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLER 140
           T P + P  +        S +R + FP  HH  RL+R
Sbjct: 407 TTPTRTPKQRRSSRIRSISDEREQLFPRHHHGRRLDR 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,720,591
Number of Sequences: 27780
Number of extensions: 133501
Number of successful extensions: 444
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)