Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0673.Seq
(268 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.10
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 0.56
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 0.97
At3g62370.1 68416.m07006 expressed protein 28 0.97
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 0.97
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 1.3
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 1.7
At5g07730.1 68418.m00886 expressed protein 26 3.0
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 26 3.0
At5g40720.1 68418.m04942 expressed protein contains Pfam profile... 26 3.9
At2g47390.1 68415.m05915 expressed protein 26 3.9
At1g72710.1 68414.m08408 casein kinase, putative similar to case... 26 3.9
At5g38450.1 68418.m04648 cytochrome P450 family protein similar ... 25 5.2
At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr... 25 5.2
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 25 5.2
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 25 6.9
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 25 6.9
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 25 6.9
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 25 6.9
At3g46590.1 68416.m05057 telomere repeat-binding protein, putati... 25 6.9
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 25 6.9
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 25 9.1
At5g33280.1 68418.m03944 chloride channel-like (CLC) protein, pu... 25 9.1
At4g32020.1 68417.m04558 expressed protein NuLL 25 9.1
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 25 9.1
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.10
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -3
Query: 149 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 3
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 0.56
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 252 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 136
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 0.97
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 113 DRAPLPPNRVSNETMKVVVFQRRSRET 33
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 237 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 142
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 164 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 27
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 152 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 57
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -3
Query: 188 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 63
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At5g07730.1 68418.m00886 expressed protein
Length = 264
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -2
Query: 261 FDNVPPQSNSPPGSVLEP-DHAGVLNGDERFRHVTTLHAWNETPCARRY 118
F+ + P+ S G P D G L G R V LH W E R Y
Sbjct: 133 FEQISPRLPSEQGGKSPPCDSDGKLLGKPLNREVDVLHDWWEPLLVRLY 181
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 38 RAIVAEKPLLS-LFHYLLGWAEAVRG 112
+++ AE P+ + LF Y GWA+ + G
Sbjct: 153 QSLTAEIPMFARLFRYYAGWADKIHG 178
>At5g40720.1 68418.m04942 expressed protein contains Pfam profile
PF01697: Domain of unknown function
Length = 583
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 217 PRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTE 86
PR+G ++ R A P RH S + ++ +++ H F E
Sbjct: 412 PRSGVTAAYTCRMALPERHKSI-IRPESLNATLINVVHHFHLKE 454
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -3
Query: 188 TATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETISHL 21
+A++ + +GT +R P DI+D P+P S K++ +RR+ ++ L
Sbjct: 93 SASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPLADL 152
>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158
Length = 465
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 172 PPRHHSARLERNTVRPPILSTAHR 101
PPRHH + ++ PP +++A R
Sbjct: 303 PPRHHGPVVGPSSALPPAITSAER 326
>At5g38450.1 68418.m04648 cytochrome P450 family protein similar to
cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]
Length = 518
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -3
Query: 137 HRAPADIIDRAPLPPNRVSNETM--KVVVFQRRSRETISHLCY 15
H+ ADII R + + + + V QRR + HLC+
Sbjct: 204 HKLTADIISRTKFGSSFEKGKELFNHLTVLQRRCAQATRHLCF 246
>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 402
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 69 HCFITYSVGRKRCAVDNI 122
H I Y++G C VDNI
Sbjct: 279 HWLIGYAIGSSNCVVDNI 296
>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 906
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 258 DNVPPQSNSPPGSVLEPDHAG 196
DNV + +SPPG+VL D G
Sbjct: 481 DNVSIEVDSPPGAVLTHDSQG 501
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 188 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 72
+ T+ ATSP T+ +P I R P + N+T
Sbjct: 30 STTTTRATSPSSTISESSNSPLAISTRKPRTQRKRPNQT 68
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 188 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNET 72
+ T+ ATSP T+ +P I R P + N+T
Sbjct: 30 STTTTRATSPSSTISESSNSPLAISTRKPRTQRKRPNQT 68
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 104 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 3
P P+R S V ++ +R+T SHL Y++ V
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLV 53
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 104 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 3
P P+R S V ++ +R+T SHL Y++ V
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLV 53
>At3g46590.1 68416.m05057 telomere repeat-binding protein, putative
similar to telomere repeat-binding protein TRP1
[Arabidopsis thaliana] gi|5459298|emb|CAB50690
Length = 552
Score = 25.0 bits (52), Expect = 6.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 107 APLPPNRVSNETMKVVVFQRRSRETIS 27
AP PPNR T + + QRR R S
Sbjct: 430 APRPPNRKFKRTEQQLAAQRRIRRPFS 456
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -1
Query: 232 PAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRP 92
P W RT ++ RR P AR E PP +++ RP
Sbjct: 21 PVWPQTRTRMDPTWLSRRPLPTVDSHARAEHTNQAPPNGASSDTSRP 67
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 255 NVPPQSNSPPGSVLEPD-HAGVLNGDERFRHVTTLHAWNETP 133
N+ P + PGS L+ +A ++ E + +T+ WN TP
Sbjct: 375 NITPPALQLPGSRLKSALNAREIDFSEEMQSLTSPTTWNNTP 416
>At5g33280.1 68418.m03944 chloride channel-like (CLC) protein,
putative similar to CLC-c, At5g49890 [Arabidopsis
thaliana] and chloride channel protein ClC-1 - Nicotiana
tabacum, PIR:T02939
Length = 763
Score = 24.6 bits (51), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 223 QCPRTGSRGSFKRRRAFPPRHHS 155
+CP G G+FK+ + PP H++
Sbjct: 386 ECPTIGRSGNFKKYQC-PPGHYN 407
>At4g32020.1 68417.m04558 expressed protein NuLL
Length = 181
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 220 CP-RTGSRGSFKRRRAFPPRHHSARLERNTVRPPI 119
CP R S R R PPR S+R V PP+
Sbjct: 28 CPNRQKKTVSNNRTRRSPPRSQSSRSSSPPVAPPL 62
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 258 DNVPPQSNSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNE 139
++ P PP S +E + + LNGD VT ++ N+
Sbjct: 669 EDFDPTQIFPPSSEVETEQSDTLNGDFANNLVTRSYSSNQ 708
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,491
Number of Sequences: 28952
Number of extensions: 126569
Number of successful extensions: 339
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 67
effective length of database: 10,130,776
effective search space used: 212746296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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