Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0672.Seq
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   3.2  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    26   4.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.6  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.7  

>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 292 VAFVRRAVGXPHPGDTDTFAEHIVGE 215
           V+ +   VG PHP D D F + I+ +
Sbjct: 234 VSAIYNCVGHPHPSDIDYFLKSIMND 259


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 304 KKLVVAFVRRAVGXPHPGDTDTFAEHIVGEPAF*KTPVQYQNP 176
           K +  +++   +    P   D + E+I   P F K  VQ  NP
Sbjct: 111 KVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQNSNP 153


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 407 LIPITRPRKSPVSLFFVTTSPCREWVICA 493
           +IPI +  KS +SL F+T SPC  + IC+
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICS 70


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 275 AAHKCNYELFNRNNFSIRYWSWNYR 349
           AA KC +E      FSI + S+N++
Sbjct: 73  AASKCEFEKIWSTTFSISFLSFNFK 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,202
Number of Sequences: 5004
Number of extensions: 45035
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)