Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0672.Seq
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.63
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2) 29 2.6
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 29 3.4
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5) 29 4.5
SB_32254| Best HMM Match : zf-TRAF (HMM E-Value=2.5) 28 7.8
SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0) 28 7.8
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = -1
Query: 436 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGXP 260
T + R ++++ R +WRASL AY K+VAVKKLVV F VG P
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 102
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = -1
Query: 385 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGXP 260
R +WRASL AY K+VAVKKLVV F VG P
Sbjct: 14 RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 55
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.63
Identities = 19/38 (50%), Positives = 20/38 (52%)
Frame = -1
Query: 373 RASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGXP 260
RASL AY K+VAVKKLVV F VG P
Sbjct: 5 RASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 42
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = -1
Query: 385 RNNWRASLXXXXXXXXXXXAYTKIVAVKKLVVAFVRRAVGXP 260
R ASL AY K+VAVKKLVV F VG P
Sbjct: 24 RERRAASLVPAAAVIPAPIAYIKVVAVKKLVVGFRDGTVGPP 65
>SB_12062| Best HMM Match : NUC129 (HMM E-Value=9.2)
Length = 111
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 325 YTKIVAVKKLVVAFVRRAVGXP 260
Y K+VAVKKLVV F VG P
Sbjct: 88 YIKVVAVKKLVVGFRDGTVGPP 109
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 325 YTKIVAVKKLVVAFVRRAVGXP 260
Y K+VAVKKLVV F VG P
Sbjct: 89 YIKVVAVKKLVVGFRDGTVGPP 110
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 325 YTKIVAVKKLVVAFVRRAVGXP 260
Y K+VAVKKLVV F VG P
Sbjct: 17 YIKVVAVKKLVVGFRDGTVGPP 38
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 561 GNQGSXSGEGA*XPATTSRKXAGAQITHSRHGEVVTKNNDTGLLRGLVIG 412
G+ G+ SG G +TS ++H HG T+N +G+ L G
Sbjct: 661 GSHGNFSGNGIYRSRSTSN------LSHGNHGSTTTRNMSSGIQSNLAFG 704
>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
Length = 203
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 287 CNYELFNRNNFSIRYWSWNYRGCWH 361
C + RN +RYW W R C H
Sbjct: 91 CEVTVIARNILPVRYWIWLSRKCGH 115
>SB_32254| Best HMM Match : zf-TRAF (HMM E-Value=2.5)
Length = 364
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 137 CRPTSTLTEEHRDRILILNRRFLERRLTD--DMLRKRVSITGMWXTDSAAHKC 289
CR S L E + NRR+L + + + + R+ ++I G TDS H+C
Sbjct: 188 CRDVSELLVEQTVKERENNRRYLSKIIQNLQFLARQGIAIQGAKETDSNFHQC 240
>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
Length = 663
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 76 RNIQAAFLARFEHSNXFK--VKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYA 231
+N + LAR+ + F ++ AHLDT RR P D+ R RYA
Sbjct: 573 KNPEPELLARWYQTGVFTPFLRAHAHLDTKRREPWLFDDVYKNVIRDALRTRYA 626
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,207,931
Number of Sequences: 59808
Number of extensions: 379122
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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