Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0669.Seq
         (812 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006A2901 Cluster: UPI00006A2901 related cluster; n...    81   3e-14
UniRef50_Q4P3R9 Cluster: Putative uncharacterized protein; n=3; ...    75   3e-12
UniRef50_A5K5F4 Cluster: Senescence-associated protein, putative...    74   5e-12
UniRef50_Q7RN96 Cluster: Putative senescence-associated protein;...    69   1e-10
UniRef50_A5B940 Cluster: Putative uncharacterized protein; n=1; ...    65   2e-09
UniRef50_Q3E811 Cluster: Uncharacterized protein YLR162W-A; n=47...    59   2e-07
UniRef50_A4VF70 Cluster: Putative uncharacterized protein; n=1; ...    56   1e-06
UniRef50_Q9AVH2 Cluster: Putative senescence-associated protein;...    49   2e-04
UniRef50_A5LFT8 Cluster: Putative uncharacterized protein; n=2; ...    43   0.011
UniRef50_UPI0000DA4670 Cluster: PREDICTED: hypothetical protein;...    42   0.024
UniRef50_O74086 Cluster: Putative uncharacterized protein PHS003...    36   0.92 
UniRef50_A0LWK0 Cluster: ABC transporter related; n=5; Actinomyc...    36   1.2  
UniRef50_Q972E8 Cluster: Putative uncharacterized protein ST1183...    36   1.2  
UniRef50_A5ZYV6 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q8VPR4 Cluster: Putative transcriptional activator; n=1...    33   6.5  

>UniRef50_UPI00006A2901 Cluster: UPI00006A2901 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00006A2901 UniRef100 entry -
           Xenopus tropicalis
          Length = 154

 Score = 81.0 bits (191), Expect = 3e-14
 Identities = 39/61 (63%), Positives = 44/61 (72%)
 Frame = +3

Query: 279 SIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEP 458
           SIG AF V +RTE+ +Q SF PF   E+SVL EL LGHLRY LTDVPPQ NSPP +V   
Sbjct: 29  SIGHAFTVCIRTENQNQMSFYPFVLHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFHL 88

Query: 459 D 461
           D
Sbjct: 89  D 89


>UniRef50_Q4P3R9 Cluster: Putative uncharacterized protein; n=3;
           Dikarya|Rep: Putative uncharacterized protein - Ustilago
           maydis (Smut fungus)
          Length = 160

 Score = 74.5 bits (175), Expect = 3e-12
 Identities = 37/66 (56%), Positives = 43/66 (65%)
 Frame = +3

Query: 279 SIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEP 458
           SIG  F V + TE+ +Q  F PF   E+SVL E  LGHLRY LTDVPPQ NSPP +V   
Sbjct: 29  SIGHTFMVCIHTENQNQGDFYPFVLLEISVLHESPLGHLRYRLTDVPPQPNSPPDNVSNS 88

Query: 459 DHAGVL 476
           D A +L
Sbjct: 89  DQAYML 94


>UniRef50_A5K5F4 Cluster: Senescence-associated protein, putative;
           n=1; Plasmodium vivax|Rep: Senescence-associated
           protein, putative - Plasmodium vivax
          Length = 131

 Score = 73.7 bits (173), Expect = 5e-12
 Identities = 35/57 (61%), Positives = 41/57 (71%)
 Frame = +3

Query: 279 SIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSV 449
           SIG AF     +E  +Q SF PF+ +E+SVL+EL  GHLRY LTDVPPQSNSPP  V
Sbjct: 51  SIGHAFTFSTFSESRNQTSFSPFSLQEISVLSELVFGHLRYYLTDVPPQSNSPPDYV 107


>UniRef50_Q7RN96 Cluster: Putative senescence-associated protein;
           n=3; Eukaryota|Rep: Putative senescence-associated
           protein - Plasmodium yoelii yoelii
          Length = 205

 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 34/57 (59%), Positives = 39/57 (68%)
 Frame = +3

Query: 279 SIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSV 449
           SIG AF     +E  +Q SF PF+ +E+SVL EL  GHL Y LTDVPPQSNSP G V
Sbjct: 29  SIGHAFTFSTFSESRNQTSFSPFSLQEISVLFELVFGHLCYFLTDVPPQSNSPSGYV 85


>UniRef50_A5B940 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 108

 Score = 65.3 bits (152), Expect = 2e-09
 Identities = 33/57 (57%), Positives = 39/57 (68%)
 Frame = +3

Query: 279 SIGRAFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSV 449
           SIG AF V +RT + +Q SF  F   E+ VL +L LGHLRY LTDV PQ NSPP +V
Sbjct: 27  SIGYAFNVRIRTGNQNQTSFYHFVLHEIFVLVKLILGHLRYLLTDVSPQPNSPPDNV 83


>UniRef50_Q3E811 Cluster: Uncharacterized protein YLR162W-A; n=47;
           Eukaryota|Rep: Uncharacterized protein YLR162W-A -
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 62

 Score = 58.8 bits (136), Expect = 2e-07
 Identities = 28/46 (60%), Positives = 32/46 (69%)
 Frame = +3

Query: 300 VPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 437
           V + TE+ +Q  F PF   E+SVL E  LGHLRY LTDVPPQ NSP
Sbjct: 2   VCIHTENQNQGDFYPFVLLEISVLHESPLGHLRYRLTDVPPQPNSP 47


>UniRef50_A4VF70 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 116

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 31/55 (56%), Positives = 37/55 (67%)
 Frame = -1

Query: 440 RRGV*LGRYICQRITQVS*GQLSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRN 276
           R GV LGR  CQ ITQ S  QLSE+ NL  +KR KA LI +FS + + ES AYR+
Sbjct: 3   RGGVCLGRNACQTITQASQVQLSENGNLTQNKRVKATLILIFSRNTNRESVAYRS 57


>UniRef50_Q9AVH2 Cluster: Putative senescence-associated protein;
           n=4; Eukaryota|Rep: Putative senescence-associated
           protein - Pisum sativum (Garden pea)
          Length = 282

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +3

Query: 381 ALGHLRYSLTDVPPQSNSPPGSVLEPD 461
           +LGHLRY LTDVPPQ NSPP +V  PD
Sbjct: 168 SLGHLRYLLTDVPPQPNSPPDNVFRPD 194



 Score = 41.9 bits (94), Expect = 0.018
 Identities = 23/43 (53%), Positives = 28/43 (65%)
 Frame = +1

Query: 250 NKFTFKIIKFR*AVLSQSLCVLNIWIKPAFALLLHARFLSSLS 378
           + F F+ +K R A LS+ + VL I IK AF LL H RFL SLS
Sbjct: 124 SSFKFRSLKDRLATLSRFVFVLEIRIKRAFTLLFHTRFLFSLS 166


>UniRef50_A5LFT8 Cluster: Putative uncharacterized protein; n=2;
           Streptococcus pneumoniae|Rep: Putative uncharacterized
           protein - Streptococcus pneumoniae SP3-BS71
          Length = 44

 Score = 42.7 bits (96), Expect = 0.011
 Identities = 23/39 (58%), Positives = 25/39 (64%)
 Frame = -3

Query: 429 LTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWLDPDVQ 313
           + GA HL  +NA VLR A   QK  VEQKGKS LD D Q
Sbjct: 1   MAGAAHLLNDNADVLRGAHGEQKSPVEQKGKSPLDFDFQ 39


>UniRef50_UPI0000DA4670 Cluster: PREDICTED: hypothetical protein;
           n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
           protein - Rattus norvegicus
          Length = 440

 Score = 41.5 bits (93), Expect = 0.024
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 413 CTAPVKLPAWQCPRTGSR 466
           CTAPVKLP W CPR+GSR
Sbjct: 75  CTAPVKLPTWHCPRSGSR 92


>UniRef50_O74086 Cluster: Putative uncharacterized protein PHS003;
           n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
           protein PHS003 - Pyrococcus horikoshii
          Length = 52

 Score = 36.3 bits (80), Expect = 0.92
 Identities = 19/34 (55%), Positives = 20/34 (58%)
 Frame = -3

Query: 435 GSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKS 334
           GSL GA    K   G LR AQ GQ+  VE KGKS
Sbjct: 2   GSLAGAARPRKGIGGALRSAQAGQESAVECKGKS 35


>UniRef50_A0LWK0 Cluster: ABC transporter related; n=5;
           Actinomycetales|Rep: ABC transporter related -
           Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
          Length = 384

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 22/78 (28%), Positives = 38/78 (48%)
 Frame = -2

Query: 772 PKKGTNRPREPGLGXXSGERRPXLKLDSSLAIVKGDMRGVA*VGRSFRRESSLKKPLLSL 593
           P+     PR PGL   +  RR   +LD++L++  G++  V  +G S   +S+L + +  L
Sbjct: 2   PEPTDTTPRHPGLDVHAVVRRDTFRLDAALSVAPGEILAV--LGPSGAGKSTLLRAIAGL 59

Query: 592 FHYLLGWAESGARSIISA 539
                G+   G R +  A
Sbjct: 60  ERLTAGFIAIGGRIVDDA 77


>UniRef50_Q972E8 Cluster: Putative uncharacterized protein ST1183;
           n=1; Sulfolobus tokodaii|Rep: Putative uncharacterized
           protein ST1183 - Sulfolobus tokodaii
          Length = 117

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 19/41 (46%), Positives = 19/41 (46%)
 Frame = +3

Query: 327 QASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSV 449
           QA FCP   R  SV  E   G   Y    VPPQ N PP  V
Sbjct: 23  QAGFCPCTLRRRSVPPEPTFGLPCYLFAGVPPQPNRPPDDV 63


>UniRef50_A5ZYV6 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 114

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +2

Query: 416 TAPVKLPAWQCPRTGSR 466
           TAPVKLP W CP  GSR
Sbjct: 55  TAPVKLPVWHCPTAGSR 71


>UniRef50_Q8VPR4 Cluster: Putative transcriptional activator; n=1;
           Micrococcus sp. 28|Rep: Putative transcriptional
           activator - Micrococcus sp. 28
          Length = 241

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 24/69 (34%), Positives = 34/69 (49%)
 Frame = -3

Query: 561 VRGR*YRRAHGVSFQACRW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLR 382
           +RGR  R  H  + QA R   G ++R  ++L R P RGH   G   G +H  +   G  R
Sbjct: 88  LRGR--RALHPRAAQAHRH-HGPHSRPLVRLRR-PARGHDHRGRAGGLLHSRREGPGGAR 143

Query: 381 PAQRGQKPR 355
             + G +PR
Sbjct: 144 TGRPGPRPR 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,560,753
Number of Sequences: 1657284
Number of extensions: 14756170
Number of successful extensions: 40596
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 38885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40577
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)