Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0669.Seq
         (812 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    25   0.54 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.0  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   5.0  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   5.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   8.8  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 458 GSRGSFKRRRAFPPRHHLHAWNETPCARRYYRPRTAFRP 574
           G+ G  +RR     R  L A+  T     +Y+P   F P
Sbjct: 170 GTTGKLRRRSTAASRSRLAAFKRTIALGAFYQPLQPFPP 208


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 603 YFHCFITYSVGRKA 562
           +FHC+     GRKA
Sbjct: 422 FFHCYCPIKFGRKA 435


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 395 ALFFDRCTAPVKLPAWQC 448
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 395 ALFFDRCTAPVKLPAWQC 448
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 429 NSPPGSVLEPDHAGVLNGDERFRHVTTCTLG 521
           N  PG +  P+H  V       R+ T  T G
Sbjct: 310 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 340


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 429 NSPPGSVLEPDHAGVLNGDERFRHVTTCTLG 521
           N  PG +  P+H  V       R+ T  T G
Sbjct: 258 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 288


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 429 NSPPGSVLEPDHAGVLNGDERFRHVTTCTLG 521
           N  PG +  P+H  V       R+ T  T G
Sbjct: 441 NMYPGEMYNPEHTTVNEAQPYVRNTTVPTQG 471


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 275 LIILKVNLFIVSCVSEFIKNNF 210
           +IIL  +L +++ + E   NNF
Sbjct: 218 MIILYSSLMVLNYIDEVFNNNF 239


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,346
Number of Sequences: 336
Number of extensions: 3523
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22206566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)