Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0669.Seq
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 29 3.3
03_04_0006 + 16257288-16259522 29 5.8
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.8
10_05_0008 + 7791462-7791611,7792378-7792833 28 7.7
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 28 7.7
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 28 7.7
04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880 28 7.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 7.7
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44... 28 7.7
01_05_0014 - 17162664-17163500 28 7.7
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 493 SATSPPARLERNTVRPPILSTAHRFPPNRVSNETMKVVVFSATI 624
S + PP +++R+++ PPI+ +F N V ++ V +A +
Sbjct: 427 SRSPPPMKVKRHSMPPPIMRAPGQFEDNEVKSQEPSVHKLAAQV 470
>03_04_0006 + 16257288-16259522
Length = 744
Score = 28.7 bits (61), Expect = 5.8
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = -1
Query: 542 GGRTVFRSKRAGGDVAETLVAV*NSRVIRFEDTARRGV*LGRYICQRITQVS*GQLSEDR 363
GGR VFRS R GG + + ED A +G + ++T+++ G + D
Sbjct: 505 GGRLVFRSTRDGGGGGRR-----HKNLYVMEDAA-----VGEFGTSKVTRLTSGAWT-DT 553
Query: 362 NLAWSKRAKAGLIQMFSTHRDCESTA 285
+ +WS R + I +FS+ RD + A
Sbjct: 554 HCSWSPREGSDWI-VFSSTRDKPAAA 578
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 496 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 407
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>10_05_0008 + 7791462-7791611,7792378-7792833
Length = 201
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 493 SATSPPARLERNTVRPPILSTAHRFPPNRVSNETMKVVVFSATIR 627
S +SPP +++R+ PPI+ A +F V + V ++ ++
Sbjct: 121 SRSSPPMKVKRHLTPPPIVRAADQFQEEEVKSPEPSVHKLASQVK 165
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 421 PSQTPRLAVSSNRITREF*TATSVSATSPPARLERNTVRPPILSTAHRFPPNRVSNE 591
P + + + ++ E TA+ SA S + PP ST H PP R+SN+
Sbjct: 167 PLEKESSSTENEKLLAETETASDGSALSDAPWTTSQRLEPPRKSTRHELPP-RLSND 222
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 502 SPPARLERNTVRPPILSTAHRFPP 573
SPPAR R + R P ST R PP
Sbjct: 87 SPPARDGRRSSRAPTYSTRFRLPP 110
>04_01_0109 + 1120981-1121249,1121326-1121536,1121683-1121880
Length = 225
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 646 VGRSFRRESSLKKPLLSLFHYLLGWAESGARSIISAGARCFVPSVQVVTW 497
VG + K LLS H LGWA + + AG R + +++ W
Sbjct: 72 VGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPW 121
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 417 PPQSNSPPGSVLEPDHAGVLNGDE 488
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>03_01_0051 +
445035-445303,445380-445590,445737-445930,446151-446228,
447049-447141,448495-448525,448729-449058
Length = 401
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -2
Query: 646 VGRSFRRESSLKKPLLSLFHYLLGWAESGARSIISAGARCFVPSVQVVTW 497
VG + K LLS H LGWA + + AG R + +++ W
Sbjct: 72 VGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPW 121
>01_05_0014 - 17162664-17163500
Length = 278
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 493 SATSPPARLERNTVRPPILSTAHRFPPNRVSNETMKVVVFSATIR 627
S + PP +++R+ PPI+ T +F + V + V +A ++
Sbjct: 180 SRSPPPMKVKRHLTPPPIVRTPSQFQEDEVKSPEPSVQKLAAQVK 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,208,887
Number of Sequences: 37544
Number of extensions: 427890
Number of successful extensions: 1237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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