Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0669.Seq
         (812 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007190-1|AAC02268.1|  513|Homo sapiens intestinal mucin protein.     31   6.5  

>AF007190-1|AAC02268.1|  513|Homo sapiens intestinal mucin protein.
          Length = 513

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 424 SQTPRLAVSSNRITREF*TATSVSATSPPARLERNTVRPPILSTAHRFPPNRVSN--ETM 597
           S TP   ++S R T  + TAT+  +    + L    V    ++T+H    N VS    T+
Sbjct: 388 SITPTDTMTSMRTTTSWPTATNTLSPLTSSILSSTPVPSTEVTTSHTTNTNPVSTLVTTL 447

Query: 598 KVVVFSATIRGETIFP 645
            + +  +T+  ET +P
Sbjct: 448 PITITRSTLTSETAYP 463


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,046,674
Number of Sequences: 237096
Number of extensions: 2332503
Number of successful extensions: 5584
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5567
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)