Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0669.Seq
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-6|AAK21375.2|  384|Caenorhabditis elegans Hypothetical ...    30   2.3  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    28   6.9  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinas...    28   9.1  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    28   9.1  

>AF003136-6|AAK21375.2|  384|Caenorhabditis elegans Hypothetical
           protein F28B3.3 protein.
          Length = 384

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 418 RPSQT-PRLA-VSSNRITREF*TATSVSATSPPARLERNT 531
           RP QT PR A + SN+  +E   +TS +A +PP  + RNT
Sbjct: 136 RPPQTAPRTASLVSNKNKKETLASTSDAAAAPPPPISRNT 175


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 417 PPQSNSPPGSVLEPDHAGVLNGDERFRHVTTCTLGT 524
           PP SNSPP S+        +  DE  RH  T T GT
Sbjct: 61  PPPSNSPPESMASLQAESPIE-DEDARHEMTSTEGT 95


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 417 PPQSNSPPGSVLEPDHAGVLNGDERFRHVTTCTLGT 524
           PP SNSPP S+        +  DE  RH  T T GT
Sbjct: 61  PPPSNSPPESMASLQAESPIE-DEDARHEMTSTEGT 95


>Z34533-7|CAA84301.2|  369|Caenorhabditis elegans Hypothetical
           protein B0285.9 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 526 NTVRPPILSTAHRFPPNRVSNETMKVVVFSATIRGETIF 642
           +T   P L   HR PP++V  +T+ + +FS    G  ++
Sbjct: 61  STSATPYLLRIHRQPPSQVFTDTVNLAIFSERGLGPKLY 99


>AY158691-1|AAN41643.1|  369|Caenorhabditis elegans choline kinase
           CKB-2 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 526 NTVRPPILSTAHRFPPNRVSNETMKVVVFSATIRGETIF 642
           +T   P L   HR PP++V  +T+ + +FS    G  ++
Sbjct: 61  STSATPYLLRIHRQPPSQVFTDTVNLAIFSERGLGPKLY 99


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = -2

Query: 553 SIISAGARCFVPSVQVVTWRKRSSPFKTPA*SGSRTLPGGEFDWGGTSVKE*RRCPKASS 374
           SI SA      P+ ++ T RKR++  +TP  S S +    +  +    V+  RR  K ++
Sbjct: 12  SIASATIDTSTPTTRLTT-RKRTAQQQTPVDSSSSSSDASDESFVACPVEAKRRKKKLTN 70

Query: 373 ARTETS 356
           +R  TS
Sbjct: 71  SRKSTS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,940,315
Number of Sequences: 27780
Number of extensions: 342668
Number of successful extensions: 916
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)