Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0669.Seq
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   4.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 639 DRFAANRR*KNHYFHCFI 586
           D   AN R +N Y+ CFI
Sbjct: 33  DEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 639 DRFAANRR*KNHYFHCFI 586
           D   AN R +N Y+ CFI
Sbjct: 33  DEILANDRLRNQYYDCFI 50


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +3

Query: 339 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG 470
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 198 NFKNKIIFNKL*YTRYNK*IYF*NN*ISI 284
           N+ N   +N   Y  YNK +Y+ N  I+I
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 SNSPPGSVLEPDHAGVLNGDERFRHVTTCTLGT 524
           S++P GS   P  A       + R V+ C+LGT
Sbjct: 148 SSAPTGSSCGPGAAAAAALLSKRRSVSECSLGT 180


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 520 ERNTVRPPILSTAHRFPPNRVSNET 594
           E +T+R PI+ +  + PPN    ET
Sbjct: 179 EFDTIRIPIVRSLSKSPPNDEGIET 203


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 198 NFKNKIIFNKL*YTRYNK*IYF 263
           +  NK I N   Y  YNK +Y+
Sbjct: 317 SLSNKTIHNNNNYKNYNKKLYY 338


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 542 RYYRPRTAFRP 574
           RY RPRT F P
Sbjct: 158 RYKRPRTTFEP 168


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 603 YFHCFITYSVGRKA 562
           +FHC+     GRKA
Sbjct: 426 FFHCYCPVRFGRKA 439


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 415  YRPSQTPRLAVSSNRITREF*TATSVSATSPPARLERNTVRPPILSTAHRFPPNRVSNET 594
            Y+P+ TP  +  +   T         +A S P  LER    P    T+   P N +  +T
Sbjct: 887  YKPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLER--ASPAFSGTSS--PTNSLVGKT 942

Query: 595  MKV 603
            + V
Sbjct: 943  VAV 945


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,896
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)