Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0668.Seq
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   0.93 
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.6  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    26   8.7  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 164 VAAVWYCQPDAGRDGADALCRGVVQDETSTL 72
           +AA+ YCQ  +G + ADAL + V +D   TL
Sbjct: 109 LAAIAYCQKLSGTNQADALWKNVEKDLKETL 139


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = -2

Query: 259 ACNLLATALCVLAWGYFLHQG------VVDPLGGINTLWPLFGIANQMLAGM--ALMLCA 104
           A +LLA  + V +W Y +H+       +V  LGG    W + G     L+ +  AL++C+
Sbjct: 488 ARSLLAIGVGVTSWNYSIHENGVFYGYIVGLLGGF-LAWLIIGAIEGGLSMIVDALLICS 546

Query: 103 VV 98
           ++
Sbjct: 547 II 548


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 224 GVGLLPPSGRGRSAGRH*HSVAAVWYCQPDAGRDGADALCRG-VVQDETSTLRLGGAGTN 48
           G GLL  S     A RH      V+  +P+AG DG  +  +G +V  +T      GA T 
Sbjct: 184 GGGLLSGSAL---AARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQ 240

Query: 47  GL 42
            L
Sbjct: 241 HL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,704,006
Number of Sequences: 5004
Number of extensions: 76792
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)