Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0668.Seq
(929 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 31 1.7
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 30 2.3
05_03_0639 + 16490882-16490934,16491471-16491540,16491988-16492215 30 3.0
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 30 3.0
11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158 29 4.0
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 29 4.0
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 29 4.0
01_03_0002 - 11506135-11506783,11506815-11506912 29 4.0
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 29 5.3
10_01_0274 - 2901033-2901778,2902475-2902634 29 7.0
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 29 7.0
05_01_0486 - 4047055-4049013 29 7.0
02_05_0466 + 29278009-29278575 28 9.2
02_01_0520 + 3761051-3761107,3761420-3761822,3761960-3762129 28 9.2
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 101 HGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDHALMEEVAPRQYA 232
HG H+RH QH G+ + N IDH+ E R ++
Sbjct: 259 HGHHHRRH-LQHYAGSASMAAAAANIVDVIDHSSDAETTTRSHS 301
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 23 QGTNQQPGRWYQRHPGVTLTFHLEQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDHAL 202
QG Q ++YQ+ H +Q + Q+ P +HL N Q+ Q +N +
Sbjct: 916 QGYASQMWQYYQQQMYYLQAQHNQQLQSLQQQQLPTEHLQQNFMQQVQQLNQQMVLWQQQ 975
Query: 203 MEEVAPRQYAQRCCQQ 250
+++ +Q Q+ QQ
Sbjct: 976 VQQQQQQQQQQQQQQQ 991
>05_03_0639 + 16490882-16490934,16491471-16491540,16491988-16492215
Length = 116
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = -3
Query: 246 WQQRCAYWRGATSSIRAWSIRWAA---LTLCGRCLVLPTRCWQGW 121
W+Q +G + + W+ WA L G CLV P + GW
Sbjct: 69 WKQMVRGCKGGSVDLLVWANFWATSRPLLRLGGCLVAPNMLYLGW 113
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 463 APPAREMIDCSPTSLESGLAYLV*C*SPSYSPPARQKRPHSAVLPEAS 606
+P +R +++ SP + ++G Y SP P + + PHS LPE+S
Sbjct: 1182 SPQSRTILESSPDNQDNGHEYP----SPPPIPESIELSPHSKALPESS 1225
>11_01_0371 - 2821224-2822036,2822162-2822222,2823755-2824158
Length = 425
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 233 QRCCQQVTGSESVRFRPGDTTPSRSCNIKRA---DAYLHPPPSE 355
QR QQ+ +S +RP P RS +I RA + +LHP P +
Sbjct: 96 QRALQQLGMMQSSAWRPQRGLPERSVSILRAWLFEHFLHPYPKD 139
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 29.5 bits (63), Expect = 4.0
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = +2
Query: 215 APRQYAQRCCQQVTGSESVRFRPGDTTPSRSCNIKRADAYLHPPPSE*TVLQTKWRSDTR 394
APR A RC +Q + +PSRS ++RA A P PS Q R
Sbjct: 520 APRLPALRCRRQAPAGSGLSGVQAAASPSRS--VRRAAASAAPSPSL-AACQVPEAPSAR 576
Query: 395 TPHPSC 412
P P C
Sbjct: 577 APLPVC 582
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 111 SISAIPASIWLAIPNSGHRVLMPPSGSTTP*WRK*PHAS 227
S S AS+ + NSG+ V+ SGSTT W+ H S
Sbjct: 121 SNSPYAASVEARLSNSGNLVVRDASGSTTTLWQSFDHPS 159
>01_03_0002 - 11506135-11506783,11506815-11506912
Length = 248
Score = 29.5 bits (63), Expect = 4.0
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +3
Query: 450 RQRRRTARTGNDRLFTHFAGIWFSVSGVMLKPQLLTTC--AAEATTFR---RPA---GGQ 605
R+RRRT TG RL A W S S KP AEA R RPA G
Sbjct: 148 RRRRRTPTTGAVRLMRRGAAPWASASSSGGKPTAAAAALSLAEAPGRRRKGRPAPVHGDV 207
Query: 606 HRPSGLFHGQKYTAXVRMITGG 671
+ G G+K A V TGG
Sbjct: 208 FQKGGDIEGEKEAAAV-TATGG 228
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 406 IMPPSAPCRM*AIPTASVGAPPAREMIDCSPTSLESGLAYLV*C*SPSYSPPARQKRPHS 585
I+P +AP +P+ + APP +ID + S S +P S A P S
Sbjct: 214 IIPSAAPTHQMGVPSGAASAPPL-PVIDTNVHSSHSTNLVTPAFFAPPSSSSASLVAPAS 272
Query: 586 AVLPEASTGH 615
+ +P AS H
Sbjct: 273 SFMPTASPFH 282
>10_01_0274 - 2901033-2901778,2902475-2902634
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 94 TTPRHRASAPSLPASGWQYQTAATEC*CRPADRPRPDGGSSPTPVRTALLPA 249
+TP + AP P S +Y T AT C P G SP+P + PA
Sbjct: 239 STPAYGTPAPECPPSTPEYGTPATAC-----PPPTAPGYGSPSPFWPPVSPA 285
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 28.7 bits (61), Expect = 7.0
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +1
Query: 79 DVSS*TTPRHRASAPSLPASGWQYQTAATEC*CRPADRPRPDGGSSPTPVRTALLPAGY 255
DVS TPRH A+A A+G T AT PA +P P S P V+ ++ P+ +
Sbjct: 62 DVSQSPTPRHAAAA---AAAGKTITTVAT-----PAKKPSPSEKSEPA-VQKSMPPSAW 111
>05_01_0486 - 4047055-4049013
Length = 652
Score = 28.7 bits (61), Expect = 7.0
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = -1
Query: 467 GAPTLAVGMAYI-LHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRLRALCCRIC--- 300
GA TL G +I L L + F+Y F LF LF+L V L +C
Sbjct: 514 GAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLFIVLFLLVIVCGEVSLVLTYMHLCVED 573
Query: 299 WAW 291
W W
Sbjct: 574 WKW 576
>02_05_0466 + 29278009-29278575
Length = 188
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 86 HLEQHHGTEHQRHPCQHLVGNTKQRPQ 166
H +QH +HQ HP QH G + PQ
Sbjct: 131 HQQQHQQHQHQHHPQQH--GMPQHHPQ 155
>02_01_0520 + 3761051-3761107,3761420-3761822,3761960-3762129
Length = 209
Score = 28.3 bits (60), Expect = 9.2
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = +3
Query: 153 NSGHRVLMPPSGSTTP*WRK*PHA-STHSAVASRLQAVNRSASG-QETPRPADPAT*SAQ 326
N+G + PP G+++ + HSA + + +G QE A T Q
Sbjct: 56 NTGRQERAPPKGTSSREEEEVNAGRQEHSAATGTHREEEEANTGRQEHAAAATTGTNHNQ 115
Query: 327 TRTCIHRRQNKQCFKQNGEVIPERHIHHAAQRAVQNVGH 443
+ CIHR++ + G+ E I A ++ Q GH
Sbjct: 116 NQDCIHRKEGGAPTSE-GQEYQEEEIGEANRKDRQQQGH 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,030,559
Number of Sequences: 37544
Number of extensions: 730749
Number of successful extensions: 2336
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2336
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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