Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0668.Seq
         (929 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55843| Best HMM Match : Aa_trans (HMM E-Value=0.00091)              35   0.11 
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)                    31   1.3  
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)                  30   3.1  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)                   29   4.1  
SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)             29   4.1  
SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)                   29   5.4  
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)                   29   5.4  
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 29   5.4  
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     29   5.4  
SB_54960| Best HMM Match : Penaeidin (HMM E-Value=4.4)                 29   7.1  
SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05)                    29   7.1  
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)                 29   7.1  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   9.4  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              28   9.4  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  
SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)                 28   9.4  

>SB_55843| Best HMM Match : Aa_trans (HMM E-Value=0.00091)
          Length = 281

 Score = 34.7 bits (76), Expect = 0.11
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -2

Query: 229 VLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVP 50
           VL    FLH G       ++ + P F +  ++L   A +LC  +++     R +WV+L  
Sbjct: 88  VLPLCLFLHFGA----NALSHVVPNFPVTQELLTVAAALLCLPLVYLKTLARVSWVSLTA 143

Query: 49  TAWLLICTLT 20
             +LL+  LT
Sbjct: 144 VVFLLVALLT 153


>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
          Length = 1120

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +3

Query: 225 STHSAVASRLQAVNRSASGQETPRPADPAT*SAQ---TRTCIHRRQNKQCFKQNG 380
           +T    AS L   N+S+S   TP+P+ PAT S++   TR  +  R++   + + G
Sbjct: 287 TTMRRTASTLPLSNQSSSTSTTPQPSSPATPSSRDHPTRGMLSTRESALTYSKQG 341


>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
          Length = 776

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = -1

Query: 242 NSAVRTGVGLLPPSGRGRSAGRH*HSVAAVWYCQPDAGRDGADALCRGVVQDETSTLRLG 63
           N+  +T   ++ PSG      R   SV  V+   P + R+  + LC     D+    + G
Sbjct: 445 NTGSQTKYTVILPSGTRIIVERRGWSVLDVFLYAPQSDRNTTEGLCGNFNNDQDDEFKQG 504

Query: 62  GAGTNGLAADLY 27
           G G     AD +
Sbjct: 505 GDGKEHSDADSF 516


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 366 FKQNGEVIPERHIHHAAQRAVQNVGHPHRQRRRTAR 473
           FK+ G    + H HHA     ++  H HR+RRR  R
Sbjct: 721 FKKAGIFTNDHHNHHAHYHHRRHHHHHHRRRRRRRR 756


>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
          Length = 816

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 366 FKQNGEVIPERHIHHAAQRAVQNVGHPHRQRRRTAR 473
           FK+ G    + H HHA     ++  H HR+RRR  R
Sbjct: 748 FKKAGIFTNDHHNHHAHYHHRRHHHHHHRRRRRRRR 783


>SB_41336| Best HMM Match : Laminin_EGF (HMM E-Value=0.036)
          Length = 367

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 114 CSVPWCCSR*NVNVTPG--WRWYQ 49
           CS  + CS  +VN+ PG  W WYQ
Sbjct: 78  CSYGYYCSNESVNLMPGFYWTWYQ 101


>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
          Length = 1122

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 97  LFKMKRQRYAWVALVPTAWLLICTLTAGW 11
           LF  K   Y W AL P  W ++  L A W
Sbjct: 402 LFLKKLAIYIWFALAPLIWAVVPLLGAAW 430


>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
          Length = 961

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
 Frame = +3

Query: 222 ASTHSAVASRLQAVNRSASGQ--ETPRPADPAT*SAQTRTCIH-RRQNKQCFKQNG-EVI 389
           A+    +  RL+A  R ASGQ  +T +P D  T + ++R  +   RQ     K +G E++
Sbjct: 24  AARRLRIQRRLEAARRQASGQDTDTKQPVDSETDALKSRKQMEDSRQRLLKLKTDGTELV 83

Query: 390 PERHIHHAAQRAVQNVGHPHRQRRRTAR 473
            +  +   A+ A++ +      R+R  +
Sbjct: 84  TKVSVAADAREAMRRLEEEESLRQRNEK 111


>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
 Frame = +3

Query: 228 THSAVASRLQAVNRSASGQETPRPADPAT*SAQTRTCIHRRQNK----QCFKQNGEVI-- 389
           TH      + A+ R A+ Q TPR A+  T   +TR C +R+ N     Q +K     I  
Sbjct: 419 THPDTQMHVHAL-RHANAQ-TPRHANVRT-RTKTRKCTYRQANTRSRTQTYKYTCTQIDT 475

Query: 390 -------PERHIHHAAQRAVQNVGHPHRQRRRTARTGNDRLFTH 500
                  P+ H+H  A R     G P     RT    +  ++TH
Sbjct: 476 RKYTYTHPDTHMHVHAPRHANTRGAPRHAYARTRTQTHKYMYTH 519


>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 336  CIHRRQNKQCFKQNGEVIPERHIHHAAQRAVQNV 437
            C+ RR+  QC +QN +  P++   H+ Q+ ++ +
Sbjct: 2508 CVIRRRGYQCSRQNPKWRPDKGEPHSTQKTMEKI 2541


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +2

Query: 92  EQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDHALMEEVAPRQYAQRCCQQVTGSE 265
           +QH G + Q+HP Q L+G   Q+PQS     ++  +L +++ P Q  Q   QQ +  +
Sbjct: 207 QQHPGHQQQQHPGQSLLG---QQPQS--GPGQLGQSLQQQL-PGQQQQNPGQQQSNQQ 258


>SB_54960| Best HMM Match : Penaeidin (HMM E-Value=4.4)
          Length = 308

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 483 DRLFTHFAGIWFSVSGVMLKPQLLTTCAAEATTFRRPAGGQHRPS 617
           DR F   A          L PQ+   CAA A    RP  G+ RP+
Sbjct: 104 DRAFREHAAAAMLTDWCQLHPQIFNVCAAGA--LARPEAGRDRPT 146


>SB_27106| Best HMM Match : PLDc (HMM E-Value=7e-05)
          Length = 515

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +3

Query: 483 DRLFTHFAGIWFSVSGVMLKPQLLTTCAAEATTFRRPAGGQHRPS 617
           DR F   A          L PQ+   CAA A    RP  G+ RP+
Sbjct: 215 DRAFREHAAAAMLTDWCQLHPQIFNVCAAGA--LARPEAGRDRPT 257


>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1208

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 551 THHLRGRSDHIPP-SCRRPAPAIGAVSWAKIHGPGSXDNRREXKRP 685
           T H+R R DH+ P  C       G +S  + H      NRR   RP
Sbjct: 848 TMHIRTRHDHLRPFKCDECGNTFGRLSHLRKHVRKVCGNRRNKDRP 893


>SB_17360| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-26)
          Length = 715

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 651 PGPCIFAHETAPMAGAGLRQDGGMWS 574
           PG  + A    PMA  G+R  GG WS
Sbjct: 341 PGQTLCAVGRKPMADVGMRHPGGAWS 366


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 86  HLEQHHGTEHQRHPCQH 136
           H +QHH   HQ+HPC H
Sbjct: 92  HHQQHH--RHQQHPCYH 106


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +2

Query: 17  CGQGTNQQPGRWYQRHPGVTLTFHLEQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDH 196
           CG  +N    R   R+  +T+       H T+  R P +H+   T+   + +    R +H
Sbjct: 108 CGHDSNPSRQRIRSRYEHITVWTRPPYEHITKWTRPPYEHITKWTRPPYEHITTRPRYEH 167

Query: 197 ALM 205
            ++
Sbjct: 168 IMV 170


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -1

Query: 599 SGRTAECGRFCRAGGE*LGL*HYTRYAKPDSSEVGEQSIISRAGGAPTLAV 447
           +G  +E G  C AGGE             ++SE GE    S AGGA    V
Sbjct: 454 AGEASEAGEVCEAGGEASEAGEAGEIG--EASEAGETGEASEAGGASKAGV 502


>SB_18107| Best HMM Match : DUF270 (HMM E-Value=0.0004)
          Length = 595

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 28/103 (27%), Positives = 41/103 (39%)
 Frame = -2

Query: 328 VCALYVAGSAGRGVSWPEADRFTACNLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFG 149
           +C   V     R  S P +D      LL + L +LA G       VD     N L   + 
Sbjct: 382 ICQTCVDNGMVRNTSVPSSDPGLLVGLLFSTLLLLAVGLLW----VDKQSS-NALRFYYL 436

Query: 148 IANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLT 20
               +L  M +  C V+L  +  Q++ W  L P   LLI + +
Sbjct: 437 YQITLLTFMCIS-CWVILKCLMNQKFTWYPLAPDDTLLIASFS 478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,645,373
Number of Sequences: 59808
Number of extensions: 712620
Number of successful extensions: 1684
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1682
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)