Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0668.Seq
         (929 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    31   1.6  
AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
           protein F29G6.3c protein.
          Length = 1453

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +2

Query: 74  TLTFHLEQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDHALMEEVAPRQYAQRCCQQV 253
           ++T H   HH   H+ H       N KQ   +  +  +    L   V P+   +     V
Sbjct: 357 SITHHDHDHHHHHHESHVTHTFTSNVKQSRSNTASTYQSRQMLAHNVGPKITEELRPAAV 416

Query: 254 TGSESVRFRP 283
              E V  RP
Sbjct: 417 LEEEEVEVRP 426


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
           protein F29G6.3b protein.
          Length = 1785

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +2

Query: 74  TLTFHLEQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDHALMEEVAPRQYAQRCCQQV 253
           ++T H   HH   H+ H       N KQ   +  +  +    L   V P+   +     V
Sbjct: 357 SITHHDHDHHHHHHESHVTHTFTSNVKQSRSNTASTYQSRQMLAHNVGPKITEELRPAAV 416

Query: 254 TGSESVRFRP 283
              E V  RP
Sbjct: 417 LEEEEVEVRP 426


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +2

Query: 74  TLTFHLEQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDHALMEEVAPRQYAQRCCQQV 253
           ++T H   HH   H+ H       N KQ   +  +  +    L   V P+   +     V
Sbjct: 357 SITHHDHDHHHHHHESHVTHTFTSNVKQSRSNTASTYQSRQMLAHNVGPKITEELRPAAV 416

Query: 254 TGSESVRFRP 283
              E V  RP
Sbjct: 417 LEEEEVEVRP 426


>AF000197-2|ABP57816.1|   90|Caenorhabditis elegans Hypothetical
           protein T21G5.6 protein.
          Length = 90

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 271 PLQARRHHAQQILQHKARRRVPASTAVRINSASNK 375
           P  AR HH +  ++HK RRR   S   R  +  NK
Sbjct: 44  PSHARHHHHKHHIRHKHRRRSLTSEEDRTKTQRNK 78


>AC084158-9|AAK68559.2|  465|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.15 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -2

Query: 157 LFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTL 23
           ++GI   +LA + ++  +VV+  + +Q+    ++ P  W+ IC+L
Sbjct: 53  IYGIILPVLAVLVVVSNSVVILVLSQQKSKRASVEPLLWMAICSL 97


>Z75527-5|CAA99776.1|  340|Caenorhabditis elegans Hypothetical
           protein C15C8.5 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 589 VLPEASTGHRGCFMGKNTR 645
           ++PE  TGH  C+MGK+ R
Sbjct: 213 MIPEIETGHVRCYMGKDFR 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,439
Number of Sequences: 27780
Number of extensions: 496172
Number of successful extensions: 1326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)