Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0668.Seq
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.14 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +1

Query: 265 IGPLQARRHHAQQILQHKARRRVPASTAVRINSASNKMAK*YQNATSIMPPSAPCRM*AI 444
           +GP     HH  Q LQH   R+ P  +    +  ++  A   Q AT    PS P     +
Sbjct: 347 MGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATP-CTPSPPRGPGGV 405

Query: 445 PTASVGA 465
           PT+ + A
Sbjct: 406 PTSVIQA 412



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = +2

Query: 14  ACGQGTNQQPGRWYQRHPGVTLTFHLEQHHGTEHQRH 124
           A G+     PG +      +  ++H  QHH +++  H
Sbjct: 293 ALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPH 329


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 466 PPAREMIDCSPTSLESG 516
           PP R++ DCS TS  SG
Sbjct: 418 PPIRKISDCSTTSSLSG 434


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 199 PDGGSSPTPVRTALLPAGYRQ*IGPLQARRHHAQQILQHKARRRVPASTAVRINS 363
           P GGS PTPV     P   +Q +   Q RR+  +    H    + P   +  +N+
Sbjct: 151 PRGGSLPTPVTPT--PTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVLSPPLNN 203


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 393 ERHIHHAAQRAVQNVGHPHRQRRRTARTGNDR 488
           + H HH    AVQ+   P++Q+++  +    R
Sbjct: 145 QNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQR 176


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 630 HETAPMAGAGLRQDGGMW 577
           ++T P++  GL Q  G+W
Sbjct: 390 NQTGPLSSTGLAQVTGIW 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,852
Number of Sequences: 438
Number of extensions: 6261
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)