Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0668.Seq
(929 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24870.1 68416.m03119 expressed protein 32 0.47
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t... 31 1.1
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2) 29 4.4
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 29 4.4
At1g24706.1 68414.m03104 expressed protein 29 4.4
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 29 5.8
At3g24880.1 68416.m03120 expressed protein 29 5.8
At5g56220.1 68418.m07016 expressed protein 28 7.7
At5g44670.1 68418.m05473 expressed protein contains Pfam:PF01697... 28 7.7
At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing ... 28 7.7
At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing ... 28 7.7
At4g18150.1 68417.m02697 hypothetical protein 28 7.7
At2g14390.1 68415.m01608 hypothetical protein 28 7.7
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 32.3 bits (70), Expect = 0.47
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +2
Query: 98 HHGTEHQRHPCQHLVGNTK----QRPQSVNAAQRIDHALMEEVAPRQYAQRCCQQVTGSE 265
H +HQ P H++GN+ Q P AQ+ A+ + ++Y Q+ QQ S
Sbjct: 1364 HLSQQHQMSPQSHVLGNSHHPHLQSPSQATGAQQEAFAIRQRQIHQRYLQQQQQQFPASG 1423
Query: 266 S----VRFRPGDTTPSRSCNIKRADAYLHPPP 349
S V+ G + S S N + + P P
Sbjct: 1424 SMMPHVQQPQGSSVSSSSQNSPQTQPPVSPQP 1455
>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 161
Score = 31.1 bits (67), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 154 TAATEC*CRPADRPRPDGGSSPTPVR 231
T AT C C+P+ +P+P P PV+
Sbjct: 23 TVATNCNCKPSPKPKPVPSPKPKPVQ 48
>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
Length = 638
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 257 GSESVRFRPGDTTPSRSCNIKRA---DAYLHPPPSE 355
G E +RP P RS NI RA + +LHP PS+
Sbjct: 492 GMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSD 527
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 154 TAATEC*CRPADRPRP-DGGSSPTP-VRTALLPAGY 255
TA T C C P+ +PRP P+P V T +P+ Y
Sbjct: 23 TAGTNCRCNPSPKPRPLPNPKVPSPKVPTPSVPSPY 58
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 425 GALGGMMDVAFWYHFAILFEALFILTAV 342
G L G + V WYH ILFE L L V
Sbjct: 356 GLLNGFLSVDDWYHANILFERLAPLNPV 383
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 154 TAATEC*CRPADRPRPDGGSSPTPV 228
TAAT+C C P+ + +P P PV
Sbjct: 23 TAATDCGCNPSPKHKPVPSPKPKPV 47
>At3g24880.1 68416.m03120 expressed protein
Length = 1957
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 98 HHGTEHQRHPCQHLVGNTK----QRPQSVNAAQRIDHALMEEVAPRQYAQRCCQQ 250
H +HQ P H++GN+ Q P AQ+ A+ + ++Y Q+ QQ
Sbjct: 1478 HLSQQHQMSPQSHVLGNSHHPHLQSPSQATGAQQEAFAIRQRQIHQRYLQQQQQQ 1532
>At5g56220.1 68418.m07016 expressed protein
Length = 973
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 29 TNQQPGRWYQRHPGVTLTF 85
TN+QPG W Q HP +T TF
Sbjct: 766 TNRQPGCWIQFHP-ITQTF 783
>At5g44670.1 68418.m05473 expressed protein contains Pfam:PF01697
Domain of unknown function
Length = 519
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 44 GRWYQRHPGVTLTFHLEQHHGTEHQRHPCQHLVGNTK 154
G+ Y R G FH H +R PC+HL T+
Sbjct: 447 GKTYHRAEGKIRYFHY--HGSISQRREPCRHLYNGTR 481
>At5g39660.2 68418.m04803 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 849 CPGLTTXPWXPVFWLPXPXXXSG 781
CPG++ W W+P P SG
Sbjct: 318 CPGVSPGAWNSFTWMPQPNSPSG 340
>At5g39660.1 68418.m04802 Dof-type zinc finger domain-containing
protein similar to H-protein promoter binding factor-2a
GI:3386546 from [Arabidopsis thaliana]
Length = 457
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 849 CPGLTTXPWXPVFWLPXPXXXSG 781
CPG++ W W+P P SG
Sbjct: 318 CPGVSPGAWNSFTWMPQPNSPSG 340
>At4g18150.1 68417.m02697 hypothetical protein
Length = 762
Score = 28.3 bits (60), Expect = 7.7
Identities = 15/59 (25%), Positives = 22/59 (37%)
Frame = +2
Query: 20 GQGTNQQPGRWYQRHPGVTLTFHLEQHHGTEHQRHPCQHLVGNTKQRPQSVNAAQRIDH 196
G G PG Q+ PG L+ + Q+ QH G+ P A ++H
Sbjct: 684 GSGYYSYPGHQNQQPPGFRQAQQLQHQQQSSQQQQQQQHYGGHGYVSPYHSQAVMSLEH 742
>At2g14390.1 68415.m01608 hypothetical protein
Length = 262
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 209 PPSGRGRSAGRH*H 168
PPSGRG+S+G H H
Sbjct: 37 PPSGRGKSSGNHSH 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,849,518
Number of Sequences: 28952
Number of extensions: 473293
Number of successful extensions: 1090
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -