Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0666.Seq
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q553E5 Cluster: Putative uncharacterized protein; n=2; ...    33   7.5  
UniRef50_A2QF65 Cluster: Similarity to protein CAP59 -Cryptococc...    32   10.0 

>UniRef50_Q553E5 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 318

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 298 PCNTSDDTTNNKYNT*KIDKTRTNPASQVGSVVNIIISRAXKETNLKW 155
           P  T+++  NN++NT        N AS+ GS+   +I +  KET  KW
Sbjct: 101 PVTTNNNNNNNEFNT-------INMASKDGSIYKCLIPKPIKETKEKW 141


>UniRef50_A2QF65 Cluster: Similarity to protein CAP59 -Cryptococcus
           neoformans; n=1; Aspergillus niger|Rep: Similarity to
           protein CAP59 -Cryptococcus neoformans - Aspergillus
           niger
          Length = 794

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 142 CALTLNYCCL*SHTARTACKKNYRFSCRIPA 50
           C +  N CCL S    ++C  NY  SC  P+
Sbjct: 136 CPINSNLCCLWSQPRSSSCSSNYASSCTNPS 166


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,994,236
Number of Sequences: 1657284
Number of extensions: 5661121
Number of successful extensions: 7540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7536
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)