Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0666.Seq
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_32565| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_59570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = -1

Query: 306 FIDRVILATIQQIISTIHKK*TKPE-----RIPRHRSAV 205
           F++R I  T+ +I S+ HKK  KP+     R P H+S V
Sbjct: 2   FMERTINVTLTKINSSAHKKSFKPDFNQRPRDPSHKSTV 40


>SB_5582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 92 CMQKKLSVLVPNSCSPGD 39
          C+ K  ++++ NSCSPGD
Sbjct: 17 CLNKCHNIVISNSCSPGD 34


>SB_32565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 140 RSHSKLLLSLVAHSAYCMQKKLSVLVPNSCSPGD 39
           + H  +L+ +     + +Q +  VL  NSCSPGD
Sbjct: 13  KQHPAILVCIRCLHIHGLQGEHRVLTSNSCSPGD 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,254,551
Number of Sequences: 59808
Number of extensions: 196728
Number of successful extensions: 1035
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)